Strain identifier

BacDive ID: 158381

Type strain: Yes

Species: Alteribacter populi

Strain Designation: FJAT-45347

Strain history: <- X. Wang; Fujian Academy of Agricultural Sciences, Fuzhou, China; FJAT-45347<-X. Wang

NCBI tax ID(s): 2011011 (species)

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General

@ref: 65057

BacDive-ID: 158381

DSM-Number: 104632

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-negative, rod-shaped, colony-forming

description: Alteribacter populi FJAT-45347 is an aerobe, spore-forming, mesophilic bacterium that forms circular colonies and was isolated from soil, Taklamakan desert.

NCBI tax id

  • NCBI tax id: 2011011
  • Matching level: species

strain history

  • @ref: 65057
  • history: <- X. Wang; Fujian Academy of Agricultural Sciences, Fuzhou, China; FJAT-45347<-X. Wang

doi: 10.13145/bacdive158381.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Alteribacter
  • species: Alteribacter populi
  • full scientific name: Alteribacter populi (Liu et al. 2018) Gupta et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Bacillus populi

@ref: 65057

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Alteribacter

species: Alteribacter populi

full scientific name: Alteribacter populi (Liu et al. 2018) Gupta et al. 2020

strain designation: FJAT-45347

type strain: yes

Morphology

cell morphology

  • @ref: 65293
  • gram stain: negative
  • cell length: 2.3-3.4 µm
  • cell width: 0.6-0.8 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 65293
  • colony size: 3.4 mm
  • colony color: yellow
  • colony shape: circular
  • incubation period: 2 days
  • medium used: Horikoshi I medium

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
65057CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
65293Horikoshi I mediumyes

culture temp

@refgrowthtypetemperature
65057positivegrowth30
65293positivegrowth15-35
65293positiveoptimum25

culture pH

@refabilitytypepHPH range
65293positivegrowth7.5-12alkaliphile
65293positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 65293
  • oxygen tolerance: aerobe

spore formation

@refspore descriptiontype of sporespore formationconfidence
65293Ellipsoidal endospores are observed at central or terminal positionsendosporeyes
125438yes94.356

halophily

@refsaltgrowthtested relationconcentration
65293NaClpositivegrowth0-20 %
65293NaClpositiveoptimum8 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6529327613amygdalin+builds acid from
6529318305arbutin+builds acid from
6529317057cellobiose+builds acid from
6529316947citrate+assimilation
6529328757fructose+builds acid from
652935291gelatin+assimilation
6529317234glucose-fermentation
6529330849L-arabinose+builds acid from
6529337657methyl D-glucoside+builds acid from
6529317632nitrate-reduction
6529317814salicin+builds acid from
6529330911sorbitol+builds acid from
6529328017starch-hydrolysis
6529327082trehalose+builds acid from
6529353424tween 20-hydrolysis
6529353423tween 40-hydrolysis
6529353425tween 60-hydrolysis
6529353426tween 80-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6529315688acetoinyes
6529316136hydrogen sulfideno
6529335581indoleno

metabolite tests

@refChebi-IDmetabolitemethylred-testvoges-proskauer-test
6529317234glucose-
6529315688acetoin+

enzymes

@refvalueactivityec
65293catalase+1.11.1.6
65293cytochrome oxidase-1.9.3.1
65293arginine dihydrolase+3.5.3.6
65293lysine decarboxylase+4.1.1.18
65293ornithine decarboxylase-4.1.1.17
65293alkaline phosphatase+3.1.3.1
65293esterase Lipase (C 8)+
65293esterase (C 4)+
65293naphthol-AS-BI-phosphohydrolase+
65293alpha-glucosidase-3.2.1.20
65293lipase (C 14)-
65293leucine arylamidase-3.4.11.1
65293valine arylamidase-
65293cystine arylamidase-3.4.11.3
65293trypsin-3.4.21.4
65293alpha-chymotrypsin-3.4.21.1
65293acid phosphatase-3.1.3.2
65293alpha-galactosidase-3.2.1.22
65293beta-galactosidase-3.2.1.23
65293beta-glucosidase-3.2.1.21
65293beta-glucuronidase-3.2.1.31
65293N-acetyl-beta-glucosaminidase-3.2.1.52
65293alpha-mannosidase-3.2.1.24
65293alpha-fucosidase-3.2.1.51

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
65057soil, Taklamakan desertXinjiang ProvinceChinaCHNAsia
65293Populus euphratica rhizosphere soilTaklamakan desert in Xin-jiangChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Plant#Rhizosphere
#Environmental#Terrestrial#Soil
#Host#Plants#Tree

Safety information

risk assessment

  • @ref: 65057
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 65057
  • description: Alteribacter populi strain FJAT-45347 16S ribosomal RNA gene, partial sequence
  • accession: KY612313
  • length: 1436
  • database: nuccore
  • NCBI tax ID: 2011011

Genome sequences

  • @ref: 66792
  • description: Alteribacter populi FJAT-45347
  • accession: GCA_002352765
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 2011011

GC content

  • @ref: 65293
  • GC-content: 40.6
  • method: genome sequence analysis

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes79.496no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no95.993yes
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes81.237yes
125438spore-formingspore-formingAbility to form endo- or exosporesyes94.356no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno92.811yes
125438motile2+flagellatedAbility to perform flagellated movementyes84.808no
125439BacteriaNetspore_formationAbility to form endo- or exosporesyes60.2
125439BacteriaNetmotilityAbility to perform movementyes57.7
125439BacteriaNetgram_stainReaction to gram-stainingpositive74.1
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthfacultative anaerobe81.7

External links

@ref: 65057

culture collection no.: DSM 104632, CCTCC AB 2016257

straininfo link

  • @ref: 111185
  • straininfo: 403004

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny29111966Bacillus populi sp. nov. isolated from Populus euphratica rhizosphere soil of the Taklamakan desert.Liu B, Liu GH, Wang XY, Wang JP, Zhu YJ, Zhang HF, Sengonca CInt J Syst Evol Microbiol10.1099/ijsem.0.0024762017Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Populus/*microbiology, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny30028282Thalassorhabdus alkalitolerans gen. nov., sp. nov., a novel Bacillaceae member isolated from marine sediment.Sultanpuram VR, Mothe TInt J Syst Evol Microbiol10.1099/ijsem.0.0029312018Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, India, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phosphatidylglycerols/analysis, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny31506848Bacillus lacisalsi sp. nov., a moderately haloalkaliphilic bacterium isolated from a saline-alkaline lake.Dong L, Wang S, Cao H, Zhao B, Zhang X, Wu K, Wang HAntonie Van Leeuwenhoek10.1007/s10482-019-01322-32019Bacillus/*genetics, Base Composition/genetics, Genomics, Lakes/*microbiology, Phylogeny, RNA, Ribosomal, 16S/geneticsGenetics
Phylogeny31613745Bacillus natronophilus sp. nov., an alkaliphilic bacterium isolated from a soda lake.Menes RJ, Machin EV, Iriarte A, Langleib MInt J Syst Evol Microbiol10.1099/ijsem.0.0037922020*Alkalies, Bacillus/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Lakes/chemistry/*microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Tanzania, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny35502996Alteribacter keqinensis sp. nov., a moderately halophilic bacterium isolated from a soda lake.Liu J, Zhang X, Cao H, Guo L, Zhao B, Zhang X, Wang Y, Wang HInt J Syst Evol Microbiol10.1099/ijsem.0.0053512022*Bacillaceae, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Lakes/microbiology, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome
Phylogeny36107764Proposal to transfer Bacillus lacisalsi Dong et al. 2021 to the genus Alteribacter as Alteribacter lacisalsi comb. nov.Narsing Rao MP, Wang H, Banerjee A, Xiao M, Li X, Kang YQ, Li WJInt J Syst Evol Microbiol10.1099/ijsem.0.0055022022Amino Acids, *Bacillaceae, *Bacillus/genetics, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleotides, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65057Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-104632Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104632)
65293Bo Liu, Guo-Hong Liu, Xiao-Ying Wang, Jie-Ping Wang, Yu-Jing Zhu, Hai-Feng Zhang, Cetin SengoncaBacillus populi sp. nov. isolated from Populus euphratica rhizosphere soil of the Taklamakan desert10.1099/ijsem.0.002476IJSEM 68: 155-159 201829111966
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
111185Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403004.1
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG