Strain identifier

BacDive ID: 158284

Type strain: Yes

Species: Kineococcus terrestris

Strain history: <- Yi Jiang, Yunnan Institute of Microbiology

NCBI tax ID(s): 2044856 (species)

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General

@ref: 64944

BacDive-ID: 158284

DSM-Number: 102155

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, motile, coccus-shaped, colony-forming

description: Kineococcus terrestris DSM 102155 is an aerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from alkaline deposit.

NCBI tax id

  • NCBI tax id: 2044856
  • Matching level: species

strain history

@refhistory
64944<- X. Chen, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; YIM 121936
67771<- Yi Jiang, Yunnan Institute of Microbiology

doi: 10.13145/bacdive158284.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kineosporiales
  • family: Kineosporiaceae
  • genus: Kineococcus
  • species: Kineococcus terrestris
  • full scientific name: Kineococcus terrestris corrig. Xu et al. 2017

  • synonyms

    • @ref: 20215
    • synonym: Kineococcus terreus

@ref: 64944

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Kineosporiaceae

genus: Kineococcus

species: Kineococcus terrestris

full scientific name: Kineococcus terrestris Xu et al. 2017

type strain: yes

Morphology

cell morphology

  • @ref: 65405
  • gram stain: positive
  • cell length: 1.0-1.3 µm
  • cell shape: coccus-shaped
  • motility: yes

colony morphology

  • @ref: 65405
  • colony color: light orange
  • colony shape: circular

Culture and growth conditions

culture medium

  • @ref: 64944
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
64944positivegrowth28mesophilic
65405positivegrowth5-45
65405positivegrowth25-35mesophilic
67771positivegrowth20-30

culture pH

@refabilitytypepHPH range
65405positivegrowth5.0-10.0alkaliphile
65405positiveoptimum7.0-8.0

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

spore formation

  • @ref: 65405
  • spore formation: no

observation

@refobservation
65405diagnostic diamino acid of the peptidoglycan is meso-diaminopimelic acid
65405whole-cell sugars are arabinose, galactose, glucose, mannose and ribose
65405predominant menaquinone is MK-9(H 2 )
65405polar lipid profile comprises diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, phosphatidylinositol mannoside, one unknown phosphoglycolipid and five unknown phospholipids

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6540517057cellobiose-assimilation
6540517108D-arabinose-assimilation
6540515824D-fructose+carbon source
6540512936D-galactose+carbon source
6540516024D-mannose+carbon source
6540563150D-rhamnose+carbon source
6540516988D-ribose+carbon source
6540517151xylitol-assimilation
654055291gelatin+hydrolysis
6540517234glucose+carbon source
6540517268myo-inositol+carbon source
65405L-alanine 4-nitroanilide+nitrogen source
6540516828L-tryptophan+nitrogen source
6540517895L-tyrosine+nitrogen source
6540517716lactose+carbon source
6540517306maltose+carbon source
65405milk-assimilation
6540517632nitrate+reduction
6540527922sorbose-assimilation
6540517992sucrose+carbon source
6540527082trehalose-assimilation
6540553424tween 20-assimilation
6540553423tween 40+assimilation
6540553425tween 60+assimilation
6540553426tween 80+assimilation
6540537166xylan+carbon source

enzymes

@refvalueactivityec
65405catalase+1.11.1.6
65405cytochrome oxidase+1.9.3.1
65405urease-3.5.1.5
65405alkaline phosphatase+3.1.3.1
65405esterase Lipase (C 8)+
65405leucine arylamidase+3.4.11.1
65405valine arylamidase+
65405cystine arylamidase+3.4.11.3
65405trypsin+3.4.21.4
65405chymotrypsin+3.4.4.5
65405acid phosphatase+3.1.3.2
65405alpha-fucosidase+3.2.1.51
65405naphthol-AS-BI-phosphohydrolase+
65405alpha-galactosidase+3.2.1.22
65405alpha-glucosidase+3.2.1.20
65405alpha-mannosidase+3.2.1.24
65405lipase (C 14)-
65405alpha-glucuronidase-3.2.1.139
65405N-acetyl-beta-glucosaminidase-3.2.1.52

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    65405C14:0 iso2.22
    65405C14:01.6
    65405C15:1 anteiso A2.15
    65405C15:0 anteiso74.74
    65405C16:0 N alcohol1.2
    65405C16:03.72
    65405C17:0 2OH4.4
    65405C17:0 3OH2.1
    65405iso-C 17:1 I and/or anteiso-C 17:1 B2.5
    65405C19:1ω6c and/or C19:0 cycloω10c/19&ome0.95
  • type of FA analysis: whole cell analysis
  • incubation medium: TSA
  • incubation temperature: 29
  • incubation time: 4
  • software version: Sherlock 6.2
  • library/peak naming table: TSBA7
  • system: MIS MIDI
  • method/protocol: Sasser, 1991
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
64944alkaline depositYunnan province, Yuanjiang (101° 56' E 23° 27' N)ChinaCHNAsia
65405an alkaline depositYuanjiang, Yunnan provinceChinaCHNAsia
67771From soilYunnan provinceChinaCHNAsia

isolation source categories

  • Cat1: #Condition
  • Cat2: #Alkaline

taxonmaps

  • @ref: 69479
  • File name: preview.99_34846.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_254;97_20557;98_25718;99_34846&stattab=map
  • Last taxonomy: Kineococcus
  • 16S sequence: KX943588
  • Sequence Identity:
  • Total samples: 114
  • soil counts: 36
  • aquatic counts: 12
  • animal counts: 42
  • plant counts: 24

Safety information

risk assessment

  • @ref: 64944
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 64944
  • description: Kineococcus terrestris strain YIM 121936 16S ribosomal RNA gene, partial sequence
  • accession: KX943588
  • length: 1489
  • database: ena
  • NCBI tax ID: 2044856

GC content

  • @ref: 64944
  • GC-content: 74.7
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 64944

culture collection no.: DSM 102155, KCTC 39738, YIM 121936

straininfo link

  • @ref: 111102
  • straininfo: 401967

literature

  • topic: Phylogeny
  • Pubmed-ID: 28984560
  • title: Kineococcus terrestris sp. nov. and Kineococcus aureolus sp. nov., isolated from saline sediment.
  • authors: Xu FJ, Li QY, Li GD, Chen X, Jiang Y, Jiang CL
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002380
  • year: 2017
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Hydrogen-Ion Concentration, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64944Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102155Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102155)
65405Fang-Ji Xu, Qin-Yuan Li, Gui-Ding Li, Xiu Chen, Yi Jiang, Cheng-Lin JiangKineococcus terrestris sp. nov. and Kineococcus aureolus sp. nov., isolated from saline sediment10.1099/ijsem.0.002380IJSEM 67: 4801-4807 201728984560
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
111102Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401967.1