Strain identifier
BacDive ID: 158263
Type strain: 
Species: Caecibacterium sporoformans
Strain Designation: 77-5
Strain history: <- L. Onrust, Ghent Univ., Belgium; 77-5 <- V. Eeckhaut {2007}
NCBI tax ID(s): 915180 (species)
version 8.1 (current version)
General
@ref: 64922
BacDive-ID: 158263
DSM-Number: 103070
keywords: 16S sequence, Bacteria, mesophilic
description: Caecibacterium sporoformans 77-5 is a mesophilic bacterium that was isolated from caecal content of a chicken .
NCBI tax id
- NCBI tax id: 915180
- Matching level: species
strain history
- @ref: 64922
- history: <- L. Onrust, Ghent Univ., Belgium; 77-5 <- V. Eeckhaut {2007}
doi: 10.13145/bacdive158263.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacillota, not assigned to class
- order: Bacillota, not assigned to order
- family: Bacillota, not assigned to family
- genus: Caecibacterium
- species: Caecibacterium sporoformans
- full scientific name: Caecibacterium sporoformans Oren et al. 2019
synonyms
- @ref: 20215
- synonym: Caecibacterium sporoformans
@ref: 64922
domain: Bacteria
phylum: Firmicutes
class: Firmicutes, not assigned to class
order: Firmicutes, not assigned to order
family: Firmicutes, not assigned to family
genus: Caecibacterium
species: Caecibacterium sporoformans
full scientific name: Caecibacterium sporoformans Oren et al. 2019
strain designation: 77-5
type strain: yes
Culture and growth conditions
culture medium
- @ref: 64922
- name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)
- growth: yes
- link: https://mediadive.dsmz.de/medium/104c
- composition: Name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l Na2CO3 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 64922
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 64922
- sample type: caecal content of a chicken (Gallus gallus)
- geographic location: Ghent, Merelbeke
- country: Belgium
- origin.country: BEL
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Birds | #Chicken |
| #Host Body Product | #Gastrointestinal tract | #Caecal content |
taxonmaps
- @ref: 69479
- File name: preview.99_28431.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_33;96_14047;97_17121;98_21262;99_28431&stattab=map
- Last taxonomy: Caecibacterium sporoformans subclade
- 16S sequence: HQ452857
- Sequence Identity:
- Total samples: 6993
- soil counts: 237
- aquatic counts: 476
- animal counts: 6153
- plant counts: 127
Safety information
risk assessment
- @ref: 64922
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 64922
- description: Caecibacterium sporoformans strain 77-5d 16S ribosomal RNA gene, partial sequence
- accession: HQ452857
- length: 1463
- database: ena
- NCBI tax ID: 915180
External links
@ref: 64922
culture collection no.: DSM 103070, LMG 27730
straininfo link
- @ref: 111081
- straininfo: 407771
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 28950926 | Caecibacterium sporoformans gen. nov., sp. nov., an anaerobic, butyrate-producing, spore-forming bacterium isolated from chicken caecum. | Onrust L, Petzoldt D, Eeckhaut V, De Maesschalck C, Haesebrouck F, Rautenschlein S, Ducatelle R, Van Immerseel F, Taras D | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002338 | 2017 | Animals, Bacterial Typing Techniques, Base Composition, Belgium, Butyrates/metabolism, Cecum/*microbiology, Chickens/*microbiology, DNA, Bacterial/genetics, Eubacterium/*classification/genetics/isolation & purification, Fatty Acids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
| Phylogeny | 30556800 | Valid publication of the names Caecibacterium and Caecibacterium sporoformans. | Oren A, Garrity GM, Spring S, Onrust L, Petzoldt D, Eeckhaut V, De Maesschalck C, Haesebrouck F, Rautenschlein S, Ducatelle R, Van Immerseel F, Taras D | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003173 | 2018 | Bacterial Typing Techniques, Base Composition, Clostridiales/classification, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Phylogeny, Sequence Analysis, DNA | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 64922 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103070 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103070) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 111081 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407771.1 |