Strain identifier
BacDive ID: 158225
Type strain:
Species: Tropicimonas marinistellae
Strain Designation: SF-16
Strain history: <- J.-S. Lee, KCTC; KCTC 42910 <- Y. Xiao and Z. Fang, Anhui University; SF-16
NCBI tax ID(s): 1739787 (species)
General
@ref: 64848
BacDive-ID: 158225
DSM-Number: 108665
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Tropicimonas marinistellae SF-16 is a mesophilic bacterium that was isolated from starfish.
NCBI tax id
- NCBI tax id: 1739787
- Matching level: species
strain history
- @ref: 64848
- history: <- J.-S. Lee, KCTC; KCTC 42910 <- Y. Xiao and Z. Fang, Anhui University; SF-16
doi: 10.13145/bacdive158225.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Tropicimonas
- species: Tropicimonas marinistellae
- full scientific name: Tropicimonas marinistellae (Zhang et al. 2017) Liang et al. 2022
synonyms
- @ref: 20215
- synonym: Pseudoruegeria marinistellae
@ref: 64848
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Pseudoruegeria
species: Pseudoruegeria marinistellae
full scientific name: Pseudoruegeria marinistellae Zhang et al. 2017
strain designation: SF-16
type strain: yes
Culture and growth conditions
culture medium
- @ref: 64848
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 64848
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | - | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | - | assimilation |
68369 | 24265 | gluconate | - | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | - | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | - | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | + | hydrolysis |
68369 | 16199 | urea | + | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68369 | gelatinase | - | |
68369 | beta-glucosidase | + | 3.2.1.21 |
68369 | urease | + | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | - | |
68382 | esterase lipase (C 8) | - | |
68382 | lipase (C 14) | - | |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | - | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
64848 | - | + | - | - | - | +/- | - | - | - | - | - | - | - | - | - | +/- | + | - | - | - |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
64848 | - | - | - | - | + | + | - | + | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 64848
- sample type: starfish
- geographic location: coast of Sanya, South China Sea (18° 22' N, 109° 45' E)
- country: China
- origin.country: CHN
- continent: Asia
- latitude: 18.3667
- longitude: 109.75
isolation source categories
- Cat1: #Host
- Cat2: #Invertebrates (Other)
- Cat3: #Echinodermata
taxonmaps
- @ref: 69479
- File name: preview.99_3710.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_1697;97_2031;98_2496;99_3710&stattab=map
- Last taxonomy: Pseudoruegeria marinistellae
- 16S sequence: KT944035
- Sequence Identity:
- Total samples: 420
- soil counts: 38
- aquatic counts: 358
- animal counts: 22
- plant counts: 2
Safety information
risk assessment
- @ref: 64848
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 64848
- description: Pseudoruegeria marinistellae strain SF-16 16S ribosomal RNA gene, partial sequence
- accession: KT944035
- length: 1432
- database: ena
- NCBI tax ID: 1739787
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Tropicimonas marinistellae SF-16 | GCA_001509585 | contig | ncbi | 1739787 |
66792 | Pseudoruegeria marinistellae SF-16 | 2728368996 | draft | img | 1739787 |
External links
@ref: 64848
culture collection no.: DSM 108665, KCTC 42910, MCCC 1K01155
straininfo link
- @ref: 111048
- straininfo: 407702
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 27770220 | Pseudoruegeria marinistellae sp. nov., isolated from an unidentified starfish in Sanya, China. | Zhang Y, Xu Y, Fang W, Wang X, Fang Z, Xiao Y | Antonie Van Leeuwenhoek | 10.1007/s10482-016-0789-z | 2016 | Animals, Base Composition/genetics, China, DNA, Bacterial/genetics, Phospholipids/metabolism, Phylogeny, Proteobacteria/*classification/genetics/*metabolism, Sequence Homology, Nucleic Acid, Species Specificity, Starfish/*microbiology, Ubiquinone/metabolism | Metabolism |
Phylogeny | 29881874 | Pseudoruegeria litorisediminis sp. nov., a novel lipolytic bacterium of the family Rhodobacteraceae isolated from a tidal flat. | Park S, Park JM, Lee JS, Oh TK, Yoon JH | Arch Microbiol | 10.1007/s00203-018-1539-6 | 2018 | Base Composition, DNA, Bacterial/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Lipids/chemistry, Lipolysis, Phosphatidylglycerols/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/isolation & purification, Ubiquinone/analysis | Enzymology |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
64848 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-108665 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108665) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68369 | Automatically annotated from API 20NE | |||
68382 | Automatically annotated from API zym | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
111048 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407702.1 |