Strain identifier

BacDive ID: 158225

Type strain: Yes

Species: Tropicimonas marinistellae

Strain Designation: SF-16

Strain history: <- J.-S. Lee, KCTC; KCTC 42910 <- Y. Xiao and Z. Fang, Anhui University; SF-16

NCBI tax ID(s): 1739787 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 64848

BacDive-ID: 158225

DSM-Number: 108665

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Tropicimonas marinistellae SF-16 is a mesophilic bacterium that was isolated from starfish.

NCBI tax id

  • NCBI tax id: 1739787
  • Matching level: species

strain history

  • @ref: 64848
  • history: <- J.-S. Lee, KCTC; KCTC 42910 <- Y. Xiao and Z. Fang, Anhui University; SF-16

doi: 10.13145/bacdive158225.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Tropicimonas
  • species: Tropicimonas marinistellae
  • full scientific name: Tropicimonas marinistellae (Zhang et al. 2017) Liang et al. 2022
  • synonyms

    • @ref: 20215
    • synonym: Pseudoruegeria marinistellae

@ref: 64848

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Pseudoruegeria

species: Pseudoruegeria marinistellae

full scientific name: Pseudoruegeria marinistellae Zhang et al. 2017

strain designation: SF-16

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 64848
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 64848
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea+hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease+3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
64848-+---+/----------+/-+---

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
64848----++-+------------

Isolation, sampling and environmental information

isolation

  • @ref: 64848
  • sample type: starfish
  • geographic location: coast of Sanya, South China Sea (18° 22' N, 109° 45' E)
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 18.3667
  • longitude: 109.75

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)
  • Cat3: #Echinodermata

taxonmaps

  • @ref: 69479
  • File name: preview.99_3710.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_1697;97_2031;98_2496;99_3710&stattab=map
  • Last taxonomy: Pseudoruegeria marinistellae
  • 16S sequence: KT944035
  • Sequence Identity:
  • Total samples: 420
  • soil counts: 38
  • aquatic counts: 358
  • animal counts: 22
  • plant counts: 2

Safety information

risk assessment

  • @ref: 64848
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 64848
  • description: Pseudoruegeria marinistellae strain SF-16 16S ribosomal RNA gene, partial sequence
  • accession: KT944035
  • length: 1432
  • database: ena
  • NCBI tax ID: 1739787

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Tropicimonas marinistellae SF-16GCA_001509585contigncbi1739787
66792Pseudoruegeria marinistellae SF-162728368996draftimg1739787

External links

@ref: 64848

culture collection no.: DSM 108665, KCTC 42910, MCCC 1K01155

straininfo link

  • @ref: 111048
  • straininfo: 407702

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny27770220Pseudoruegeria marinistellae sp. nov., isolated from an unidentified starfish in Sanya, China.Zhang Y, Xu Y, Fang W, Wang X, Fang Z, Xiao YAntonie Van Leeuwenhoek10.1007/s10482-016-0789-z2016Animals, Base Composition/genetics, China, DNA, Bacterial/genetics, Phospholipids/metabolism, Phylogeny, Proteobacteria/*classification/genetics/*metabolism, Sequence Homology, Nucleic Acid, Species Specificity, Starfish/*microbiology, Ubiquinone/metabolismMetabolism
Phylogeny29881874Pseudoruegeria litorisediminis sp. nov., a novel lipolytic bacterium of the family Rhodobacteraceae isolated from a tidal flat.Park S, Park JM, Lee JS, Oh TK, Yoon JHArch Microbiol10.1007/s00203-018-1539-62018Base Composition, DNA, Bacterial/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Lipids/chemistry, Lipolysis, Phosphatidylglycerols/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/isolation & purification, Ubiquinone/analysisEnzymology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64848Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-108665Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108665)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
111048Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID407702.1