Strain identifier

BacDive ID: 158211

Type strain: Yes

Species: Micromonospora soli

Strain Designation: SL3-70

Strain history: <- NBRC; NBRC 110009 <- C Suriyachadkun, BIOTEC; SL3-70 <- S. Kongsan; SL3-70

NCBI tax ID(s): 1530045 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 8.1 (current version)

General

@ref: 64812

BacDive-ID: 158211

DSM-Number: 108661

keywords: 16S sequence, Bacteria, mesophilic

description: Micromonospora soli SL3-70 is a mesophilic bacterium that was isolated from soil of rice paddy.

NCBI tax id

  • NCBI tax id: 1530045
  • Matching level: species

strain history

  • @ref: 64812
  • history: <- NBRC; NBRC 110009 <- C Suriyachadkun, BIOTEC; SL3-70 <- S. Kongsan; SL3-70

doi: 10.13145/bacdive158211.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Micromonospora
  • species: Micromonospora soli
  • full scientific name: Micromonospora soli Thawai et al. 2016

@ref: 64812

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Micromonospora

species: Micromonospora soli

full scientific name: Micromonospora soli Thawai et al. 2016

strain designation: SL3-70

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
64812CZAPEK PEPTONE AGAR (DSMZ Medium 83)yeshttps://mediadive.dsmz.de/medium/83Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water
64812N-Z-AMINE-MEDIUM (DSMZ Medium 554)yeshttps://mediadive.dsmz.de/medium/554Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
64812TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
64812GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

  • @ref: 64812
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 64812
  • sample type: soil of rice paddy
  • geographic location: Chumporn province
  • country: Thailand
  • origin.country: THA
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Field
#Host#Plants#Herbaceous plants (Grass,Crops)
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 64812
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 64812
  • description: Micromonospora soli gene for 16S ribosomal RNA, partial sequence
  • accession: AB981051
  • length: 1503
  • database: ena
  • NCBI tax ID: 1530045

External links

@ref: 64812

culture collection no.: DSM 108661, BCC 67268, NBRC 110009

straininfo link

  • @ref: 111040
  • straininfo: 400516

literature

  • topic: Phylogeny
  • Pubmed-ID: 26800665
  • title: Micromonospora soli sp. nov., isolated from rice rhizosphere soil.
  • authors: Thawai C, Kittiwongwattana C, Thanaboripat D, Laosinwattana C, Koohakan P, Parinthawong N
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-016-0651-3
  • year: 2016
  • mesh: Bacterial Typing Techniques, Base Composition, DNA Gyrase/*genetics, Micromonospora/chemistry/*classification/genetics/isolation & purification, Oryza, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64812Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-108661Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108661)
111040Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400516.1