Strain identifier

BacDive ID: 158178

Type strain: Yes

Species: Flavicella marina

Strain Designation: 2A-7

Strain history: <- NBRC <- M. Teramoto, Oceanography Section, Kochi University, Kohasu, Japan; 2A-7

NCBI tax ID(s): 1475951 (species)

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General

@ref: 64771

BacDive-ID: 158178

DSM-Number: 107616

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Flavicella marina 2A-7 is a mesophilic bacterium that was isolated from surface seawater.

NCBI tax id

  • NCBI tax id: 1475951
  • Matching level: species

strain history

  • @ref: 64771
  • history: <- NBRC <- M. Teramoto, Oceanography Section, Kochi University, Kohasu, Japan; 2A-7

doi: 10.13145/bacdive158178.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavicella
  • species: Flavicella marina
  • full scientific name: Flavicella marina Teramoto and Nishijima 2015

@ref: 64771

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavicella

species: Flavicella marina

full scientific name: Flavicella marina Teramoto and Nishijima 2015

strain designation: 2A-7

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 64771
  • name: MARINE BROTH (ROTH CP73) (DSMZ Medium 514f)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514f
  • composition: Name: MARINE BROTH (ROTH CP73) (DSMZ Medium 514f) Composition: NaCl 19.4 g/l Agar 15.0 g/l MgCl2 8.8 g/l Peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 64771
  • growth: positive
  • type: growth
  • temperature: 25
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 64771
  • sample type: surface seawater
  • geographic location: Muroto city
  • country: Japan
  • origin.country: JPN
  • continent: Asia
  • latitude: 33.3
  • longitude: 134.183

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Surface water

Safety information

risk assessment

  • @ref: 64771
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 64771
  • description: Flavicella marina gene for 16S ribosomal RNA, partial sequence
  • accession: AB915171
  • length: 1375
  • database: ena
  • NCBI tax ID: 1475951

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Flavicella marina 2A-7GCA_009193215contigncbi1475951
66792Flavicella marina 2A-72887124424draftimg1475951

External links

@ref: 64771

culture collection no.: DSM 107616, KCTC 42197, NBRC 110145

straininfo link

  • @ref: 111009
  • straininfo: 406196

literature

  • topic: Phylogeny
  • Pubmed-ID: 25481292
  • title: Flavicella marina gen. nov., sp. nov., a carotenoid-producing bacterium from surface seawater.
  • authors: Teramoto M, Nishijima M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.000018
  • year: 2014
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Japan, Molecular Sequence Data, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, beta Carotene/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64771Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-107616Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107616)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
111009Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID406196.1