Strain identifier
BacDive ID: 158091
Type strain: 
Species: Coprococcus aceti
Strain Designation: H2-11, H2_11
Strain history: T. Lawley; Wellcome Trust Sanger Inst., UK; Sanger_122.
NCBI tax ID(s): 33043 (species)
version 8.1 (current version)
General
@ref: 64666
BacDive-ID: 158091
DSM-Number: 107541
keywords: genome sequence, Bacteria, anaerobe, mesophilic, Gram-positive
description: Coprococcus aceti H2-11 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from human faeces.
NCBI tax id
- NCBI tax id: 33043
- Matching level: species
strain history
| @ref | history |
|---|---|
| 64666 | <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; H2_11 |
| 67770 | T. Lawley; Wellcome Trust Sanger Inst., UK; Sanger_122. |
doi: 10.13145/bacdive158091.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Lachnospiraceae
- genus: Coprococcus
- species: Coprococcus aceti
- full scientific name: Coprococcus aceti Hitch et al. 2021
@ref: 64666
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Lachnospiraceae
genus: Coprococcus
species: Coprococcus eutactus
full scientific name: Coprococcus eutactus Holdeman and Moore 1974
strain designation: H2-11, H2_11
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 64666 | WILKINS-CHALGREN ANAEROBE BROTH (N2/CO2) (DSMZ Medium 339a) | yes | https://mediadive.dsmz.de/medium/339a | Name: WILKINS-CHALGREN ANAEROBE BROTH (N2/CO2) (DSMZ Medium 339a) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l D-Glucose 5.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water |
| 64666 | RCM MEDIUM (N2/CO2) (DSMZ Medium 634c) | yes | https://mediadive.dsmz.de/medium/634c | Name: RCM MEDIUM (N2/CO2) (DSMZ Medium 634c) Composition: dehydrated RCM medium 38.0 g/l Sodium carbonate 1.0 g/l Sodium resazurin 0.0005 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 64666 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 99.13
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.328
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 64666 | human faeces | Cambridgeshire, Hinxton | United Kingdom | GBR | Europe | 52.0785 | 0.1861 |
| 67770 | Human feces |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Safety information
risk assessment
- @ref: 64666
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Coprococcus eutactus JCM 31265 | GCA_016586415 | contig | ncbi | 33043 |
| 66792 | Coprococcus eutactus strain JCM 31265 | 33043.1600 | wgs | patric | 33043 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 59 | no |
| gram-positive | yes | 91.645 | no |
| anaerobic | yes | 99.734 | no |
| halophile | no | 68.266 | no |
| spore-forming | no | 68.555 | no |
| glucose-util | yes | 86.395 | no |
| motile | no | 91.726 | no |
| flagellated | no | 92.579 | no |
| aerobic | no | 98.949 | no |
| thermophile | no | 97.024 | yes |
| glucose-ferment | yes | 69.054 | no |
External links
@ref: 64666
culture collection no.: DSM 107541, JCM 31265
straininfo link
- @ref: 110932
- straininfo: 400807
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 64666 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-107541 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107541) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 110932 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400807.1 |