Strain identifier
BacDive ID: 158066
Type strain:
Species: Pseudomonas mandelii
Strain Designation: 7HK4
Strain history: <- A. Krikstaponis, Institute of Biochemistry, Life Science Center, Vilnius, Lithuania;7HK4
NCBI tax ID(s): 75612 (species)
General
@ref: 64640
BacDive-ID: 158066
DSM-Number: 107615
keywords: 16S sequence, Bacteria, mesophilic
description: Pseudomonas mandelii 7HK4 is a mesophilic bacterium that was isolated from soil of home yard.
NCBI tax id
- NCBI tax id: 75612
- Matching level: species
strain history
- @ref: 64640
- history: <- A. Krikstaponis, Institute of Biochemistry, Life Science Center, Vilnius, Lithuania;7HK4
doi: 10.13145/bacdive158066.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas mandelii
- full scientific name: Pseudomonas mandelii Verhille et al. 1999
@ref: 64640
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Burkholderiales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas mandelii
full scientific name: Pseudomonas mandelii Verhille et al. 1999
strain designation: 7HK4
type strain: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
64640 | MINERAL MEDIUM WITH VITAMINS (DSMZ Medium 462) | yes | https://mediadive.dsmz.de/medium/462 | Name: MINERAL MEDIUM (BRUNNER) WITH VITAMINS (DSMZ Medium 462) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Casein peptone 15.0 g/l Peptone 5.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Meat extract 3.0 g/l Na2HPO4 2.44 g/l KH2PO4 1.52 g/l (NH4)2SO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 2 H2O 0.05 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.002 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l Pyridoxamine 0.000125 g/l ZnSO4 x 7 H2O 0.0001 g/l Nicotinic acid 5e-05 g/l Vitamin B12 5e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l MnCl2 x 4 H2O 3e-05 g/l p-Aminobenzoate 2.5e-05 g/l Thiamine-HCl x 2 H2O 2.5e-05 g/l NiCl2 x 6 H2O 2e-05 g/l Calcium pantothenate 1.25e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Biotin 5e-06 g/l Distilled water |
64640 | REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) | yes | https://mediadive.dsmz.de/medium/1a | Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
culture temp
- @ref: 64640
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 64640
- sample type: soil of home yard
- country: Lithuania
- origin.country: LTU
- continent: Europe
- latitude: 55.3614
- longitude: 24.7443
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Agriculture | #Garden |
#Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_555.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_89;98_98;99_555&stattab=map
- Last taxonomy: Pseudomonas
- 16S sequence: MH346031
- Sequence Identity:
- Total samples: 42314
- soil counts: 16904
- aquatic counts: 8731
- animal counts: 11521
- plant counts: 5158
Safety information
risk assessment
- @ref: 64640
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 64640
- description: Pseudomonas mandelii strain 7HK4 16S ribosomal RNA gene, partial sequence
- accession: MH346031
- length: 1320
- database: ena
- NCBI tax ID: 75612
External links
@ref: 64640
culture collection no.: DSM 107615
straininfo link
- @ref: 110910
- straininfo: 407749
literature
- topic: Metabolism
- Pubmed-ID: 30321993
- title: Biodegradation of 7-Hydroxycoumarin in Pseudomonas mandelii 7HK4 via ipso-Hydroxylation of 3-(2,4-Dihydroxyphenyl)-propionic Acid.
- authors: Krikstaponis A, Meskys R
- journal: Molecules
- DOI: 10.3390/molecules23102613
- year: 2018
- mesh: Bacterial Proteins/genetics/metabolism, Cloning, Molecular, Hydrolases/genetics/metabolism, Hydroxylation, Mixed Function Oxygenases/genetics/metabolism, Multigene Family, *Operon, Oxygenases/genetics/metabolism, Phenylpropionates/*chemistry, Pseudomonas/genetics/*metabolism, Sequence Analysis, DNA, Umbelliferones/*chemistry
- topic2: Enzymology
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
64640 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-107615 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107615) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
110910 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407749.1 |