Strain identifier
BacDive ID: 158005
Type strain: 
Species: Phaeobacter gallaeciensis
Strain Designation: P12, 04/149
Strain history: <- H. Freese, Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH; P12 <- J. L. Nicolas, Centre de Bretagne, IFREMER; 04/149
NCBI tax ID(s): 60890 (species)
version 9.2 (current version)
General
@ref: 64578
BacDive-ID: 158005
DSM-Number: 29967
keywords: Bacteria, mesophilic
description: Phaeobacter gallaeciensis P12 is a mesophilic bacterium that was isolated from scallop larve Pecten maximus ; aquaculture.
NCBI tax id
- NCBI tax id: 60890
- Matching level: species
strain history
- @ref: 64578
- history: <- H. Freese, Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH; P12 <- J. L. Nicolas, Centre de Bretagne, IFREMER; 04/149
doi: 10.13145/bacdive158005.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Phaeobacter
- species: Phaeobacter gallaeciensis
- full scientific name: Phaeobacter gallaeciensis (Ruiz-Ponte et al. 1998) Martens et al. 2006
synonyms
- @ref: 20215
- synonym: Roseobacter gallaeciensis
@ref: 64578
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Phaeobacter
species: Phaeobacter gallaeciensis
full scientific name: Phaeobacter gallaeciensis (Ruiz-Ponte et al. 1998) Martens et al. 2006
strain designation: P12, 04/149
type strain: no
Culture and growth conditions
culture medium
- @ref: 64578
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 64578
- growth: positive
- type: growth
- temperature: 25
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 27689 | decanoate | - | assimilation |
| 68369 | 17306 | maltose | + | assimilation |
| 68369 | 59640 | N-acetylglucosamine | + | assimilation |
| 68369 | 16899 | D-mannitol | + | assimilation |
| 68369 | 16024 | D-mannose | + | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | + | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | + | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64578 | - | - | - | - | - | + | - | + | +/- | +/- | + | + | + | + | +/- | - | +/- | + | +/- | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 64578
- sample type: scallop larve Pecten maximus ; aquaculture
- geographic location: Bay of Brest
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Aquaculture |
| #Host | #Invertebrates (Other) | #Mollusca |
| #Host | #Juvenile |
Safety information
risk assessment
- @ref: 64578
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
External links
@ref: 64578
culture collection no.: DSM 29967
straininfo link
- @ref: 110852
- straininfo: 400262
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 64578 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29967 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29967) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 68369 | Automatically annotated from API 20NE | |||||
| 110852 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400262.1 |