Strain identifier
BacDive ID: 157973
Type strain: 
Species: Prosthecomicrobium sp.
Strain Designation: 6
Strain history: <- J. T. Staley, Univ. of Washington, Seattle, USA; ATCC 27827
NCBI tax ID(s): 2212461 (species)
version 8.1 (current version)
General
@ref: 64546
BacDive-ID: 157973
DSM-Number: 16179
keywords: 16S sequence, Bacteria, mesophilic
description: Prosthecomicrobium sp. 6 is a mesophilic bacterium that was isolated from Red Cedar River.
NCBI tax id
- NCBI tax id: 2212461
- Matching level: species
strain history
- @ref: 64546
- history: <- J. T. Staley, Univ. of Washington, Seattle, USA; ATCC 27827
doi: 10.13145/bacdive157973.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Hyphomicrobiaceae
- genus: Prosthecomicrobium
- species: Prosthecomicrobium sp.
- full scientific name: Prosthecomicrobium Staley 1968 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Prosthecodimorpha
@ref: 64546
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Hyphomicrobiaceae
genus: Prosthecomicrobium
species: Prosthecomicrobium sp.
full scientific name: Prosthecomicrobium sp.
strain designation: 6
type strain: no
Culture and growth conditions
culture medium
- @ref: 64546
- name: MMB MEDIUM (DSMZ Medium 1417)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1417
- composition: Name: MMB MEDIUM (DSMZ Medium 1417) Composition: Agar 15.0 g/l Glucose 1.0 g/l MgSO4 x 7 H2O 0.565714 g/l Ammonium Sulfate 0.25 g/l Nitrilotriacetic acid 0.190476 g/l Peptone 0.15 g/l Yeast extract 0.15 g/l CaCl2 x 2 H2O 0.063619 g/l ZnSO4 x 7 H2O 0.00104762 g/l FeSO4 x 7 H2O 0.00047619 g/l EDTA 0.000238095 g/l Ammonium Molybdate 0.00017619 g/l MnSO4 x 7 H2O 0.000146667 g/l Thiamine HCl 5e-05 g/l Riboflavin 5e-05 g/l D-Calcium pantothenate 5e-05 g/l CuSO4 x 5 H2O 3.80952e-05 g/l Co(NO3)2 x 6 H2O 2.38095e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Na2B4O7 x 10 H2O 1.71429e-05 g/l Vitamin B12 1e-06 g/l Distilled water
culture temp
- @ref: 64546
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 64546
- sample type: Red Cedar River
- geographic location: Michigan
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #River (Creek)
taxonmaps
- @ref: 69479
- File name: preview.99_9635.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_4675;97_5666;98_7120;99_9635&stattab=map
- Last taxonomy: Prosthecomicrobium hirschii subclade
- 16S sequence: GQ221762
- Sequence Identity:
- Total samples: 4904
- soil counts: 439
- aquatic counts: 4069
- animal counts: 192
- plant counts: 204
Sequence information
16S sequences
- @ref: 64546
- description: Prosthecomicrobium hirschii strain 6 16S ribosomal RNA gene, partial sequence
- accession: GQ221762
- length: 1422
- database: ena
- NCBI tax ID: 665126
External links
@ref: 64546
culture collection no.: DSM 16179, ATCC 27827
straininfo link
- @ref: 110822
- straininfo: 39200
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 64546 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16179 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16179) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 110822 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID39200.1 |