Strain identifier

BacDive ID: 157962

Type strain: No

Species: Actinomyces sp.

Strain Designation: G10

Strain history: <- S. Palakawong Na Ayudthaya, TISTR; TISTR 2318 <- A. Vandzurova, G. Body, P. Javosrky, Slovak Academy of Sciences

NCBI tax ID(s): 29317 (species)

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General

@ref: 64534

BacDive-ID: 157962

DSM-Number: 100377

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Actinomyces sp. G10 is a mesophilic bacterium that was isolated from rumen fuid, sheep .

NCBI tax id

  • NCBI tax id: 29317
  • Matching level: species

strain history

  • @ref: 64534
  • history: <- S. Palakawong Na Ayudthaya, TISTR; TISTR 2318 <- A. Vandzurova, G. Body, P. Javosrky, Slovak Academy of Sciences

doi: 10.13145/bacdive157962.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Actinomycetales
  • family: Actinomycetaceae
  • genus: Actinomyces
  • species: Actinomyces sp.
  • full scientific name: Actinomyces Harz 1877 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Odontomyces
    20215Actinobacterium

@ref: 64534

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Actinomycetaceae

genus: Actinomyces

species: Actinomyces sp.

full scientific name: Actinomyces sp.

strain designation: G10

type strain: no

Culture and growth conditions

culture medium

  • @ref: 64534
  • name: BBL ACTINOMYCES BROTH (DSMZ Medium 1029)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1029
  • composition: Name: BBL ACTINOMYCES BROTH (DSMZ Medium 1029) Composition: Infusion Broth 1.425 g/l Potassium Phosphate 0.855 g/l Dextrose 0.285 g/l Yeast extract 0.285 g/l Pancreatic digest of casein 0.228 g/l L-Cysteine HCl 0.057 g/l Starch 0.057 g/l Ammonium Sulfate 0.057 g/l Magnesium sulfate 0.0114 g/l Calcium Chloride 0.00057 g/l Distilled water

culture temp

  • @ref: 64534
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase+
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase+3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
64534--+/-+-+++/-----------+-++-+-----

Isolation, sampling and environmental information

isolation

  • @ref: 64534
  • sample type: rumen fuid, sheep (Slovenske merino)
  • country: Slovakia
  • origin.country: SVK
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Caprinae (Sheep/Goat)
#Host Body Product#Fluids#Rumen fluid

taxonmaps

  • @ref: 69479
  • File name: preview.99_942.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_124;96_553;97_639;98_738;99_942&stattab=map
  • Last taxonomy: Actinomyces glycerinitolerans subclade
  • 16S sequence: KC866613
  • Sequence Identity:
  • Total samples: 1872
  • soil counts: 78
  • aquatic counts: 104
  • animal counts: 1666
  • plant counts: 24

Sequence information

16S sequences

  • @ref: 64534
  • description: Actinomyces ruminicola strain G10 16S ribosomal RNA gene, partial sequence
  • accession: KC866613
  • length: 1519
  • database: ena
  • NCBI tax ID: 1892869

Genome sequences

  • @ref: 66792
  • description: Actinomyces glycerinitolerans G10
  • accession: 2791355097
  • assembly level: draft
  • database: img
  • NCBI tax ID: 1892869

External links

@ref: 64534

culture collection no.: DSM 100377, TISTR 2318

straininfo link

  • @ref: 110811
  • straininfo: 404670

literature

  • topic: Phylogeny
  • Pubmed-ID: 27613227
  • title: Actinomyces succiniciruminis sp. nov. and Actinomyces glycerinitolerans sp. nov., two novel organic acid-producing bacteria isolated from rumen.
  • authors: Palakawong N A S, Pristas P, Hrehova L, Javorsky P, Stams AJ, Plugge CM
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2016.08.001
  • year: 2016
  • mesh: *Actinomyces/classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition/genetics, Base Sequence, Cattle/*microbiology, Cell Wall/chemistry, DNA, Bacterial/genetics, Fatty Acids/analysis, Female, Genes, Essential/genetics, Glycerol/metabolism, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Rumen/*microbiology, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sheep/*microbiology, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/*veterinary, Succinic Acid/metabolism
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64534Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100377Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100377)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
110811Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID404670.1