Strain identifier

BacDive ID: 157935

Type strain: No

Species: Klebsiella pneumoniae

Strain Designation: Kp-Goe-827026, Kp_Goe_827026

Strain history: <- W. Bohne, Institute for Medical Microbiology, University of Göttingen; Kp-Goe-827026

NCBI tax ID(s): 573 (species)

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General

@ref: 64507

BacDive-ID: 157935

DSM-Number: 103705

keywords: genome sequence, Bacteria, mesophilic, antibiotic resistance, human pathogen

description: Klebsiella pneumoniae Kp-Goe-827026 is a mesophilic human pathogen that has multiple antibiotic resistances and was isolated from clinical material, nose swab.

NCBI tax id

  • NCBI tax id: 573
  • Matching level: species

strain history

  • @ref: 64507
  • history: <- W. Bohne, Institute for Medical Microbiology, University of Göttingen; Kp-Goe-827026

doi: 10.13145/bacdive157935.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Klebsiella
  • species: Klebsiella pneumoniae
  • full scientific name: Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Hyalococcus pneumoniae

@ref: 64507

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Klebsiella

species: Klebsiella pneumoniae

full scientific name: Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887

strain designation: Kp-Goe-827026, Kp_Goe_827026

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
64507NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
64507COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 64507
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

antibiogram

  • @ref: 64507
  • medium: Mueller-Hinton Agar
  • incubation temperature: 30
  • oxygen condition: aerob
  • Penicillin G: 0
  • oxacillin: 0
  • ampicillin: 0
  • ticarcillin: 0
  • mezlocillin: 0
  • cefalotin: 0
  • cefazolin: 0
  • cefotaxime: 0
  • aztreonam: 0
  • imipenem: 36
  • tetracycline: 6
  • chloramphenicol: 0
  • gentamycin: 22
  • amikacin: 18
  • vancomycin: 0
  • erythromycin: 14
  • lincomycin: 0
  • ofloxacin: 8
  • norfloxacin: 0
  • colistin: 14
  • pipemidic acid: 0
  • nitrofurantoin: 0
  • bacitracin: 0
  • polymyxin b: 16
  • kanamycin: 10
  • neomycin: 18
  • doxycycline: 12
  • ceftriaxone: 0
  • clindamycin: 0
  • fosfomycin: 20
  • moxifloxacin: 8
  • linezolid: 0
  • nystatin: 0
  • quinupristin/dalfopristin: 0
  • teicoplanin: 0
  • piperacillin/tazobactam: 16-18

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836817632nitrate+reduction
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine+degradation

metabolite production

@refChebi-IDmetaboliteproduction
6836817997dinitrogenno
6836816301nitriteyes
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase+4.1.1.18

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOXNO2N2
64507--+-+----+-+++++++++-+-
64507+++-+-+--+-++++++++++/-

Isolation, sampling and environmental information

isolation

  • @ref: 64507
  • sample type: clinical material, nose swab
  • geographic location: Göttingen
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Organ#Nose
#Infection#Patient#Swab

Safety information

risk assessment

  • @ref: 64507
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Klebsiella pneumoniae Kp_Goe_827026GCA_001908655completencbi573
66792Klebsiella pneumoniae strain Kp_Goe_827026573.16067plasmidpatric573
66792Klebsiella pneumoniae strain Kp_Goe_827026573.7354completepatric573
66792Klebsiella pneumoniae strain Kp_Goe_827026573.16063plasmidpatric573
66792Klebsiella pneumoniae strain Kp_Goe_827026573.16071plasmidpatric573
66792Klebsiella pneumoniae strain Kp_Goe_827026573.16078plasmidpatric573
66792Klebsiella pneumoniae strain Kp_Goe_827026573.16075plasmidpatric573
66792Klebsiella pneumoniae Kp_Goe_8270262721755830completeimg573

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno92.038no
gram-positiveno97.177no
anaerobicno96.875no
aerobicyes88.463no
halophileno90.707no
spore-formingno93.229no
glucose-utilyes94.517no
thermophileno99.626no
motileno84.923no
glucose-fermentyes91.154no

External links

@ref: 64507

culture collection no.: DSM 103705

straininfo link

  • @ref: 110786
  • straininfo: 399577

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64507Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103705Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103705)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
110786Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399577.1