Strain identifier

BacDive ID: 157932

Type strain: No

Species: Klebsiella pneumoniae

Strain Designation: Kp-Goe-822917, Kp_Goe_822917

Strain history: <- W. Bohne, Institute for Medical Microbiology, University of Göttingen; Kp-Goe-822917

NCBI tax ID(s): 573 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 64504

BacDive-ID: 157932

DSM-Number: 103702

keywords: genome sequence, Bacteria, mesophilic, antibiotic resistance, human pathogen

description: Klebsiella pneumoniae Kp-Goe-822917 is a mesophilic human pathogen that has multiple antibiotic resistances and was isolated from clinical material, skin swap.

NCBI tax id

  • NCBI tax id: 573
  • Matching level: species

strain history

  • @ref: 64504
  • history: <- W. Bohne, Institute for Medical Microbiology, University of Göttingen; Kp-Goe-822917

doi: 10.13145/bacdive157932.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Klebsiella
  • species: Klebsiella pneumoniae
  • full scientific name: Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Hyalococcus pneumoniae

@ref: 64504

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Klebsiella

species: Klebsiella pneumoniae

full scientific name: Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887

strain designation: Kp-Goe-822917, Kp_Goe_822917

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
64504COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
64504NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 64504
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

antibiogram

  • @ref: 64504
  • medium: Mueller-Hinton Agar
  • incubation temperature: 30
  • oxygen condition: aerob
  • Penicillin G: 0
  • oxacillin: 0
  • ampicillin: 0
  • ticarcillin: 0
  • mezlocillin: 0
  • cefalotin: 0
  • cefazolin: 0
  • cefotaxime: 0
  • aztreonam: 0
  • imipenem: 28
  • tetracycline: 26
  • chloramphenicol: 16
  • gentamycin: 12
  • amikacin: 26
  • vancomycin: 0
  • erythromycin: 0
  • lincomycin: 0
  • ofloxacin: 8-10
  • norfloxacin: 0
  • colistin: 12
  • pipemidic acid: 0
  • nitrofurantoin: 8
  • bacitracin: 0
  • polymyxin b: 14
  • kanamycin: 10
  • neomycin: 16
  • doxycycline: 22
  • ceftriaxone: 0
  • clindamycin: 0
  • fosfomycin: 26
  • moxifloxacin: 10
  • linezolid: 0
  • nystatin: 0
  • quinupristin/dalfopristin: 0
  • teicoplanin: 0
  • piperacillin/tazobactam: 8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836817632nitrate+reduction
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine+degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836817997dinitrogenno
6836816301nitriteyes
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOXNO2N2
64504--+-+----+-+++++++++-+-
64504+-+-+-+--+-++++++++++/-

Isolation, sampling and environmental information

isolation

  • @ref: 64504
  • sample type: clinical material, skin swap
  • geographic location: Göttingen
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Organ#Skin, Nail, Hair
#Infection#Patient#Swab

Safety information

risk assessment

  • @ref: 64504
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Klebsiella pneumoniae Kp_Goe_822917GCA_001902415completencbi573
66792Klebsiella pneumoniae strain Kp_Goe_822917573.16034plasmidpatric573
66792Klebsiella pneumoniae strain Kp_Goe_822917573.16028plasmidpatric573
66792Klebsiella pneumoniae strain Kp_Goe_822917573.16030plasmidpatric573
66792Klebsiella pneumoniae strain Kp_Goe_822917573.16027plasmidpatric573
66792Klebsiella pneumoniae strain Kp_Goe_822917573.16031plasmidpatric573
66792Klebsiella pneumoniae strain Kp_Goe_822917573.7245completepatric573
66792Klebsiella pneumoniae strain Kp_Goe_822917573.16032plasmidpatric573
66792Klebsiella pneumoniae strain Kp_Goe_822917573.16029plasmidpatric573
66792Klebsiella pneumoniae strain Kp_Goe_822917573.16033plasmidpatric573
66792Klebsiella pneumoniae Kp_Goe_8229172718217966completeimg573

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno93.823no
gram-positiveno97.384no
anaerobicno96.202no
aerobicyes88.846no
halophileno87.901no
spore-formingno93.233no
thermophileno99.767yes
glucose-utilyes94.778no
motileno82.786no
glucose-fermentyes91.015yes

External links

@ref: 64504

culture collection no.: DSM 103702

straininfo link

  • @ref: 110783
  • straininfo: 405416

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64504Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103702Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103702)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
110783Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405416.1