Strain identifier

BacDive ID: 157931

Type strain: No

Species: Klebsiella pneumoniae

Strain Designation: Kp-Goe-822579, Kp_Goe_822579

Strain history: <- W. Bohne, Institute for Medical Microbiology, University of Göttingen; Kp-Goe-822579

NCBI tax ID(s): 573 (species)

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General

@ref: 64503

BacDive-ID: 157931

DSM-Number: 103701

keywords: genome sequence, Bacteria, mesophilic, antibiotic resistance, human pathogen

description: Klebsiella pneumoniae Kp-Goe-822579 is a mesophilic human pathogen that has multiple antibiotic resistances and was isolated from clinical material.

NCBI tax id

  • NCBI tax id: 573
  • Matching level: species

strain history

  • @ref: 64503
  • history: <- W. Bohne, Institute for Medical Microbiology, University of Göttingen; Kp-Goe-822579

doi: 10.13145/bacdive157931.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Klebsiella
  • species: Klebsiella pneumoniae
  • full scientific name: Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Hyalococcus pneumoniae

@ref: 64503

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Klebsiella

species: Klebsiella pneumoniae

full scientific name: Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887

strain designation: Kp-Goe-822579, Kp_Goe_822579

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
64503COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
64503NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 64503
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

antibiogram

  • @ref: 64503
  • medium: Mueller-Hinton Agar
  • incubation temperature: 30
  • oxygen condition: aerob
  • Penicillin G: 0
  • oxacillin: 0
  • ampicillin: 0
  • ticarcillin: 0
  • mezlocillin: 0
  • cefalotin: 0
  • cefazolin: 0
  • cefotaxime: 0
  • aztreonam: 0
  • imipenem: 22
  • tetracycline: 0
  • chloramphenicol: 0
  • gentamycin: 6
  • amikacin: 12
  • vancomycin: 0
  • erythromycin: 8-10
  • lincomycin: 0
  • ofloxacin: 0
  • norfloxacin: 0
  • colistin: 14-16
  • pipemidic acid: 0
  • nitrofurantoin: 0
  • bacitracin: 0
  • polymyxin b: 16
  • kanamycin: 6
  • neomycin: 16
  • doxycycline: 8-10
  • ceftriaxone: 0
  • clindamycin: 0
  • fosfomycin: 20
  • moxifloxacin: 0
  • linezolid: 0
  • nystatin: 0
  • quinupristin/dalfopristin: 0
  • teicoplanin: 0
  • piperacillin/tazobactam: 6-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836817632nitrate-reduction
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836817997dinitrogenyes
6836816301nitriteno
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOXNO2N2
64503+---+----+-++++++++++
64503+-+-+----+-+++++++++--+

Isolation, sampling and environmental information

isolation

  • @ref: 64503
  • sample type: clinical material
  • geographic location: Göttingen
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

  • Cat1: #Infection
  • Cat2: #Medical environment
  • Cat3: #Clinic

Safety information

risk assessment

  • @ref: 64503
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Klebsiella pneumoniae Kp_Goe_822579GCA_001885255completencbi573
66792Klebsiella pneumoniae strain Kp_Goe_822579573.15996plasmidpatric573
66792Klebsiella pneumoniae strain Kp_Goe_822579573.15998plasmidpatric573
66792Klebsiella pneumoniae strain Kp_Goe_822579573.16000plasmidpatric573
66792Klebsiella pneumoniae strain Kp_Goe_822579573.15999plasmidpatric573
66792Klebsiella pneumoniae strain Kp_Goe_822579573.7226completepatric573
66792Klebsiella pneumoniae strain Kp_Goe_822579573.15995plasmidpatric573
66792Klebsiella pneumoniae strain Kp_Goe_822579573.15997plasmidpatric573
66792Klebsiella pneumoniae Kp_Goe_8225792728369383completeimg573

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno92.038no
flagellatedno92.038no
gram-positiveno97.177no
gram-positiveno97.177no
anaerobicno96.875no
anaerobicno96.875no
aerobicyes88.463no
aerobicyes88.463no
halophileno90.707no
halophileno90.707no
spore-formingno93.184no
spore-formingno93.184no
glucose-utilyes94.517no
glucose-utilyes94.517no
thermophileno99.626yes
thermophileno99.626yes
motileno84.923no
motileno84.923no
glucose-fermentyes91.236no
glucose-fermentyes91.236no

External links

@ref: 64503

culture collection no.: DSM 103701

straininfo link

  • @ref: 110782
  • straininfo: 406005

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64503Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103701Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103701)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
110782Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID406005.1