Strain identifier
BacDive ID: 157930
Type strain:
Species: Klebsiella pneumoniae
Strain Designation: Kp-Goe-821588, Kp_Goe_821588
Strain history: <- W. Bohne, Institute for Medical Microbiology, University of Göttingen; Kp-Goe-821588
NCBI tax ID(s): 573 (species)
General
@ref: 64502
BacDive-ID: 157930
DSM-Number: 103700
keywords: genome sequence, Bacteria, mesophilic, antibiotic resistance, human pathogen
description: Klebsiella pneumoniae Kp-Goe-821588 is a mesophilic human pathogen that has multiple antibiotic resistances and was isolated from clinical material, anal swap.
NCBI tax id
- NCBI tax id: 573
- Matching level: species
strain history
- @ref: 64502
- history: <- W. Bohne, Institute for Medical Microbiology, University of Göttingen; Kp-Goe-821588
doi: 10.13145/bacdive157930.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Klebsiella
- species: Klebsiella pneumoniae
- full scientific name: Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Hyalococcus pneumoniae
@ref: 64502
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Klebsiella
species: Klebsiella pneumoniae
full scientific name: Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887
strain designation: Kp-Goe-821588, Kp_Goe_821588
type strain: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
64502 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
64502 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
culture temp
- @ref: 64502
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
antibiogram
- @ref: 64502
- medium: Mueller-Hinton Agar
- incubation temperature: 30
- oxygen condition: aerob
- Penicillin G: 0
- oxacillin: 0
- ampicillin: 0
- ticarcillin: 0
- mezlocillin: 0
- cefalotin: 0
- cefazolin: 0
- cefotaxime: 6
- aztreonam: 6
- imipenem: 26
- tetracycline: 22-24
- chloramphenicol: 22
- gentamycin: 8
- amikacin: 22
- vancomycin: 0
- erythromycin: 16
- lincomycin: 0
- ofloxacin: 8
- norfloxacin: 0
- colistin: 8-10
- pipemidic acid: 0
- nitrofurantoin: 6
- bacitracin: 0
- polymyxin b: 12-14
- kanamycin: 0
- neomycin: 14
- doxycycline: 20
- ceftriaxone: 6
- clindamycin: 0
- fosfomycin: 26
- moxifloxacin: 10
- linezolid: 0
- nystatin: 0
- quinupristin/dalfopristin: 0
- teicoplanin: 0
- piperacillin/tazobactam: 10
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68368 | 17632 | nitrate | + | reduction |
68368 | 30849 | L-arabinose | + | fermentation |
68368 | 27613 | amygdalin | + | fermentation |
68368 | 28053 | melibiose | + | fermentation |
68368 | 17992 | sucrose | + | fermentation |
68368 | 62345 | L-rhamnose | + | fermentation |
68368 | 30911 | sorbitol | + | fermentation |
68368 | 17268 | myo-inositol | + | fermentation |
68368 | 16899 | D-mannitol | + | fermentation |
68368 | 17634 | D-glucose | + | fermentation |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16947 | citrate | + | assimilation |
68368 | 18257 | ornithine | - | degradation |
68368 | 25094 | lysine | + | degradation |
68368 | 29016 | arginine | - | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 17997 | dinitrogen | no |
68368 | 16301 | nitrite | yes |
68368 | 15688 | acetoin | yes |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68368 | 15688 | acetoin | + | |
68368 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | + | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | TDA Trp | IND | VP | OX | NO2 | N2 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
64502 | + | - | + | - | + | - | + | - | + | + | + | + | + | + | + | + | + | ||||||
64502 | + | - | + | - | + | - | - | - | + | + | + | + | + | + | + | + | + | - | - | + | |||
64502 | + | - | + | - | + | - | - | - | + | + | + | + | + | + | + | + | + | - | - | + | - | + | - |
Isolation, sampling and environmental information
isolation
- @ref: 64502
- sample type: clinical material, anal swap
- geographic location: Göttingen
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host Body-Site | #Gastrointestinal tract | #Rectum |
#Infection | #Patient | #Swab |
Safety information
risk assessment
- @ref: 64502
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Klebsiella pneumoniae Kp_Goe_821588 | GCA_001908895 | complete | ncbi | 573 |
66792 | Klebsiella pneumoniae strain Kp_Goe_821588 | 573.16060 | plasmid | patric | 573 |
66792 | Klebsiella pneumoniae strain Kp_Goe_821588 | 573.7359 | complete | patric | 573 |
66792 | Klebsiella pneumoniae Kp_Goe_821588 | 2721755832 | complete | img | 573 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 93.962 | no |
gram-positive | no | 97.401 | no |
anaerobic | no | 96.182 | no |
aerobic | yes | 88.847 | no |
halophile | no | 87.598 | no |
spore-forming | no | 93.221 | no |
thermophile | no | 99.758 | yes |
glucose-util | yes | 94.775 | no |
motile | no | 82.453 | no |
glucose-ferment | yes | 91.05 | yes |
External links
@ref: 64502
culture collection no.: DSM 103700
straininfo link
- @ref: 110781
- straininfo: 408133
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
64502 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103700 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103700) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68368 | Automatically annotated from API 20E | |||
110781 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID408133.1 |