Strain identifier

BacDive ID: 157927

Type strain: No

Species: Klebsiella pneumoniae

Strain Designation: Kp-Goe-39795, Kp_Goe_39795

Strain history: <- W. Bohne, Institute for Medical Microbiology, University of Göttingen; Kp-Goe-39795

NCBI tax ID(s): 573 (species)

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General

@ref: 64499

BacDive-ID: 157927

DSM-Number: 103697

keywords: genome sequence, Bacteria, mesophilic, antibiotic resistance, human pathogen

description: Klebsiella pneumoniae Kp-Goe-39795 is a mesophilic human pathogen that has multiple antibiotic resistances and was isolated from clinical material, tracheal secretion.

NCBI tax id

  • NCBI tax id: 573
  • Matching level: species

strain history

  • @ref: 64499
  • history: <- W. Bohne, Institute for Medical Microbiology, University of Göttingen; Kp-Goe-39795

doi: 10.13145/bacdive157927.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Klebsiella
  • species: Klebsiella pneumoniae
  • full scientific name: Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Hyalococcus pneumoniae

@ref: 64499

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Klebsiella

species: Klebsiella pneumoniae

full scientific name: Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887

strain designation: Kp-Goe-39795, Kp_Goe_39795

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
64499COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
64499NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 64499
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

antibiogram

  • @ref: 64499
  • medium: Mueller-Hinton Agar
  • incubation temperature: 30
  • oxygen condition: aerob
  • Penicillin G: 0
  • oxacillin: 0
  • ampicillin: 0
  • ticarcillin: 0
  • mezlocillin: 0
  • cefalotin: 0
  • cefazolin: 0
  • cefotaxime: 8-10
  • aztreonam: 10
  • imipenem: 30
  • tetracycline: 0
  • chloramphenicol: 6
  • gentamycin: 8
  • amikacin: 22
  • vancomycin: 0
  • erythromycin: 10
  • lincomycin: 0
  • ofloxacin: 0
  • norfloxacin: 0
  • colistin: 16
  • pipemidic acid: 0
  • nitrofurantoin: 10-12
  • bacitracin: 0
  • polymyxin b: 16
  • kanamycin: 14
  • neomycin: 20
  • doxycycline: 8
  • ceftriaxone: 8
  • clindamycin: 0
  • fosfomycin: 22
  • moxifloxacin: 8
  • linezolid: 0
  • nystatin: 0
  • quinupristin/dalfopristin: 0
  • teicoplanin: 0
  • piperacillin/tazobactam: 12

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836817632nitrate+reduction
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine+degradation

metabolite production

@refChebi-IDmetaboliteproduction
6836817997dinitrogenno
6836816301nitriteyes
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOXNO2N2
64499+++-+-+--+-+++++++++-
64499+-+-+-+--+-+++++++++-+-

Isolation, sampling and environmental information

isolation

  • @ref: 64499
  • sample type: clinical material, tracheal secretion
  • geographic location: Göttingen
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Oral cavity and airways#Trachea
#Infection#Patient

Safety information

risk assessment

  • @ref: 64499
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Klebsiella pneumoniae Kp_Goe_39795GCA_001902395completencbi573
66792Klebsiella pneumoniae strain Kp_Goe_39795573.7244completepatric573
66792Klebsiella pneumoniae strain Kp_Goe_39795573.16043plasmidpatric573
66792Klebsiella pneumoniae strain Kp_Goe_39795573.16042plasmidpatric573
66792Klebsiella pneumoniae strain Kp_Goe_39795573.16044plasmidpatric573
66792Klebsiella pneumoniae strain Kp_Goe_39795573.16041plasmidpatric573
66792Klebsiella pneumoniae Kp_Goe_397952728369387completeimg573

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno93.401no
gram-positiveno97.378no
anaerobicno95.774no
aerobicyes89.861no
halophileno88.89no
spore-formingno92.784no
thermophileno99.664no
glucose-utilyes94.47no
motileno84.038no
glucose-fermentyes91.473yes

External links

@ref: 64499

culture collection no.: DSM 103697

straininfo link

  • @ref: 110778
  • straininfo: 403025

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64499Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103697Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103697)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
110778Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403025.1