Strain identifier

BacDive ID: 157903

Type strain: No

Species: Vibrio sp.

Strain Designation: 65.7M

Strain history: <- H. Cypionka, Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky University Oldenburg; 65.7M

NCBI tax ID(s): 678 (species)

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General

@ref: 64476

BacDive-ID: 157903

DSM-Number: 108966

keywords: Bacteria

description: Vibrio sp. 65.7M is a bacterium that was isolated from sediment.

NCBI tax id

  • NCBI tax id: 678
  • Matching level: species

strain history

  • @ref: 64476
  • history: <- H. Cypionka, Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky University Oldenburg; 65.7M

doi: 10.13145/bacdive157903.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio sp.
  • full scientific name: Vibrio Pacini 1854 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Beneckea
    20215Lucibacterium
    20215Allomonas

@ref: 64476

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Vibrio

species: Vibrio sp.

full scientific name: Vibrio sp.

strain designation: 65.7M

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose-fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole+

enzymes

@refvalueactivityec
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368cytochrome oxidase+1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
64476++--+---+--++-+++-+++

Isolation, sampling and environmental information

isolation

  • @ref: 64476
  • sample type: sediment
  • geographic location: Danish Exclusive Economic Zone (55° 28.09' N, 15° 28.63' E)
  • country: Denmark
  • origin.country: DNK
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Sediment
#Environmental#Terrestrial#Sediment

External links

@ref: 64476

culture collection no.: DSM 108966

straininfo link

  • @ref: 110756
  • straininfo: 404967

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64476Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-108966Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108966)
68368Automatically annotated from API 20E
110756Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID404967.1