Strain identifier
BacDive ID: 157897
Type strain: 
Species: Vibrio eleionomae
Strain Designation: SW9
Strain history: <- B. Gomez-Gil, CAIM <- C. Bolan-Mejia
NCBI tax ID(s): 678 (species)
version 9.3 (current version)
General
@ref: 64470
BacDive-ID: 157897
DSM-Number: 24596
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Vibrio eleionomae SW9 is a mesophilic, Gram-negative bacterium that was isolated from water from shrimp pond .
NCBI tax id
- NCBI tax id: 678
- Matching level: species
strain history
- @ref: 64470
- history: <- B. Gomez-Gil, CAIM <- C. Bolan-Mejia
doi: 10.13145/bacdive157897.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Vibrio
- species: Vibrio eleionomae
- full scientific name: Vibrio eleionomae Enciso-Ibarra et al. 2023
@ref: 64470
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales, not validated
family: Vibrionaceae
genus: Vibrio
species: Vibrio sp.
full scientific name: Vibrio sp.
strain designation: SW9
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125438 | negative | 99 |
| 125439 | negative | 99.4 |
multimedia
- @ref: 64470
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_24596.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 64470
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 64470
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 98.9
spore formation
- @ref: 125439
- spore formation: no
- confidence: 99.6
Isolation, sampling and environmental information
isolation
- @ref: 64470
- sample type: water from shrimp pond (Litopenaeus sp.)
- geographic location: Sinaloa, Los Mochis, Acu
- country: Mexico
- origin.country: MEX
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Aquaculture |
| #Host | #Arthropoda | #Crustacea |
| #Environmental | #Aquatic | #Pond (small) |
Sequence information
16S sequences
- @ref: 124043
- description: Vibrio sp. CAIM 722 16S ribosomal RNA gene, partial sequence.
- accession: ON406572
- length: 1528
- database: nuccore
- NCBI tax ID: 2653505
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Vibrio eleionomae CAIM 722 | GCA_009874545 | contig | ncbi | 2653505 |
| 66792 | Vibrio sp. CAIM 722 | 2653505.3 | wgs | patric | 2653505 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 99 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 93.262 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 82.748 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 64.205 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 97.5 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 89.744 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 99.6 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 79.8 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 99.4 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 98.9 |
External links
@ref: 64470
culture collection no.: DSM 24596, CAIM 722
straininfo link
- @ref: 110751
- straininfo: 400439
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 64470 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24596 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24596) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 110751 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400439.1 | |
| 124043 | Isabel Schober, Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy | ||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |