Strain identifier

BacDive ID: 157864

Type strain: No

Species: Salmonella enterica subsp. enterica

Strain Designation: strain 422

Strain history: <- N. Chanishvili, The Eliava Institute of Bacteriophage, MIcrobiology & Virology; strain 422 <- unknown

NCBI tax ID(s): 59201 (subspecies)

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General

@ref: 64437

BacDive-ID: 157864

DSM-Number: 107307

keywords: genome sequence, Bacteria, mesophilic

description: Salmonella enterica subsp. enterica strain 422 is a mesophilic bacterium that was isolated from female patient with diarrhea.

NCBI tax id

  • NCBI tax id: 59201
  • Matching level: subspecies

strain history

  • @ref: 64437
  • history: <- N. Chanishvili, The Eliava Institute of Bacteriophage, MIcrobiology & Virology; strain 422 <- unknown

doi: 10.13145/bacdive157864.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Salmonella
  • species: Salmonella enterica subsp. enterica
  • full scientific name: Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

  • synonyms

    • @ref: 20215
    • synonym: Salmonella choleraesuis subsp. choleraesuis

@ref: 64437

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Salmonella

species: Salmonella enterica subsp. enterica

full scientific name: Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

strain designation: strain 422

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
64437COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
64437NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 64437
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin-fermentation
6836828053melibiose+fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
64437-+++++---+-+++++-+-+-

Isolation, sampling and environmental information

isolation

  • @ref: 64437
  • sample type: female patient with diarrhea
  • geographic location: Tbilisi
  • country: Georgia
  • origin.country: GEO
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Host#Human#Female
#Infection#Disease
#Host Body-Site#Gastrointestinal tract
#Infection#Patient

Safety information

risk assessment

  • @ref: 64437
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Salmonella enterica subsp. enterica serovar Typhimurium strain 422
  • accession: 90371.4772
  • assembly level: wgs
  • database: patric
  • NCBI tax ID: 90371

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes89.49no
flagellatedno50.973no
gram-positiveno98.701no
anaerobicno90.223no
halophileno93.919no
spore-formingno93.7no
glucose-utilyes92.65no
aerobicyes70.462no
thermophileno98.654yes
glucose-fermentyes92.651yes

External links

@ref: 64437

culture collection no.: DSM 107307

straininfo link

  • @ref: 110719
  • straininfo: 405047

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64437Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-107307Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107307)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
110719Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405047.1