Strain identifier
BacDive ID: 157863
Type strain:
Species: Salmonella enterica subsp. enterica
Strain Designation: strain 407
Strain history: <- N. Chanishvili, The Eliava Institute of Bacteriophage, MIcrobiology & Virology; strain 407 <- unknown
NCBI tax ID(s): 59201 (subspecies)
General
@ref: 64436
BacDive-ID: 157863
DSM-Number: 107306
keywords: genome sequence, Bacteria, mesophilic
description: Salmonella enterica subsp. enterica strain 407 is a mesophilic bacterium that was isolated from patient with diarrhea.
NCBI tax id
- NCBI tax id: 59201
- Matching level: subspecies
strain history
- @ref: 64436
- history: <- N. Chanishvili, The Eliava Institute of Bacteriophage, MIcrobiology & Virology; strain 407 <- unknown
doi: 10.13145/bacdive157863.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Salmonella
- species: Salmonella enterica subsp. enterica
- full scientific name: Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987
synonyms
- @ref: 20215
- synonym: Salmonella choleraesuis subsp. choleraesuis
@ref: 64436
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Salmonella
species: Salmonella enterica subsp. enterica
full scientific name: Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987
strain designation: strain 407
type strain: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
64436 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
64436 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
culture temp
- @ref: 64436
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68368 | 30849 | L-arabinose | + | fermentation |
68368 | 27613 | amygdalin | - | fermentation |
68368 | 28053 | melibiose | + | fermentation |
68368 | 17992 | sucrose | - | fermentation |
68368 | 62345 | L-rhamnose | + | fermentation |
68368 | 30911 | sorbitol | + | fermentation |
68368 | 17268 | myo-inositol | - | fermentation |
68368 | 16899 | D-mannitol | + | fermentation |
68368 | 17634 | D-glucose | + | fermentation |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | - | hydrolysis |
68368 | 16947 | citrate | + | assimilation |
68368 | 18257 | ornithine | + | degradation |
68368 | 25094 | lysine | + | degradation |
68368 | 29016 | arginine | + | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | yes |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | yes |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68368 | 15688 | acetoin | + | |
68368 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | lysine decarboxylase | + | 4.1.1.18 |
68368 | arginine dihydrolase | + | 3.5.3.6 |
68368 | beta-galactosidase | - | 3.2.1.23 |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
64436 | - | + | + | + | + | + | - | - | - | + | - | + | + | - | + | + | - | + | - | + | - |
Isolation, sampling and environmental information
isolation
- @ref: 64436
- sample type: patient with diarrhea
- geographic location: Tbilisi
- country: Georgia
- origin.country: GEO
- continent: Asia
isolation source categories
Cat1 | Cat2 |
---|---|
#Infection | #Disease |
#Host Body-Site | #Gastrointestinal tract |
#Infection | #Patient |
Safety information
risk assessment
- @ref: 64436
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Salmonella enterica subsp. enterica serovar Enteritidis strain 407
- accession: 149539.2278
- assembly level: wgs
- database: patric
- NCBI tax ID: 149539
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 89.737 | no |
gram-positive | no | 98.751 | no |
anaerobic | no | 89.779 | no |
aerobic | yes | 72.521 | no |
halophile | no | 94.006 | no |
spore-forming | no | 93.726 | no |
thermophile | no | 99.059 | yes |
glucose-util | yes | 92.693 | no |
flagellated | no | 51.713 | no |
glucose-ferment | yes | 92.753 | yes |
External links
@ref: 64436
culture collection no.: DSM 107306
straininfo link
- @ref: 110718
- straininfo: 405029
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
64436 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-107306 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107306) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68368 | Automatically annotated from API 20E | |||
110718 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405029.1 |