Strain identifier

BacDive ID: 157859

Type strain: No

Species: Salmonella enterica subsp. enterica

Strain Designation: strain 311

Strain history: <- N. Chanishvili, The Eliava Institute of Bacteriophage, MIcrobiology & Virology; strain 311 <- unknown

NCBI tax ID(s): 59201 (subspecies)

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General

@ref: 64432

BacDive-ID: 157859

DSM-Number: 107302

keywords: genome sequence, Bacteria, mesophilic, antibiotic resistance

description: Salmonella enterica subsp. enterica strain 311 is a mesophilic bacterium that has multiple antibiotic resistances and was isolated from male patient with diarrhea.

NCBI tax id

  • NCBI tax id: 59201
  • Matching level: subspecies

strain history

  • @ref: 64432
  • history: <- N. Chanishvili, The Eliava Institute of Bacteriophage, MIcrobiology & Virology; strain 311 <- unknown

doi: 10.13145/bacdive157859.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Salmonella
  • species: Salmonella enterica subsp. enterica
  • full scientific name: Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

  • synonyms

    • @ref: 20215
    • synonym: Salmonella choleraesuis subsp. choleraesuis

@ref: 64432

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Salmonella

species: Salmonella enterica subsp. enterica

full scientific name: Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

strain designation: strain 311

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
64432COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
64432NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 64432
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

antibiogram

@refmediumincubation temperatureoxygen conditionPenicillin Goxacillinampicillinticarcillinmezlocillincefalotincefazolincefotaximeaztreonamimipenemtetracyclinechloramphenicolgentamycinamikacinvancomycinerythromycinlincomycinofloxacinnorfloxacincolistinpipemidic acidnitrofurantoinbacitracinpolymyxin bkanamycinneomycindoxycyclineceftriaxoneclindamycinfosfomycinmoxifloxacinlinezolidnystatinquinupristin/dalfopristinteicoplaninpiperacillin/tazobactam
64432Mueller-Hinton Agar37aerob00001020243836342662222080242612-1412-14220162218-20203603622-24006026
64432Mueller-Hinton Agar37aerob00001020243836342662222080242612-1412-14220162218-20203603622-24006026

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin-fermentation
6836828053melibiose+fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
64432-+++++---+-+++++-+-+-

Isolation, sampling and environmental information

isolation

  • @ref: 64432
  • sample type: male patient with diarrhea
  • geographic location: Tbilisi
  • country: Georgia
  • origin.country: GEO
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Infection#Disease
#Host Body-Site#Gastrointestinal tract
#Host#Human#Male

Safety information

risk assessment

  • @ref: 64432
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Salmonella enterica subsp. enterica serovar Typhimurium strain 311
  • accession: 90371.4554
  • assembly level: wgs
  • database: patric
  • NCBI tax ID: 90371

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes88.798no
flagellatedno52.167no
gram-positiveno98.715no
anaerobicno90.864no
halophileno94.203no
spore-formingno93.955no
thermophileno98.754yes
glucose-utilyes92.973no
aerobicyes70.946no
glucose-fermentyes92.364yes

External links

@ref: 64432

culture collection no.: DSM 107302

straininfo link

  • @ref: 110714
  • straininfo: 398138

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64432Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-107302Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107302)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
110714Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398138.1