Strain identifier

BacDive ID: 157755

Type strain: No

Species: unclassified bacterium

Strain Designation: Melo94

Strain history: <- N. Norskov-Lauritsen, Aarhus Univ. Hospital, Dept. of Clinical Microbiol.; Melo94 <- A. Zbinden, Univ. Zurich, Switzerland; Melo94

NCBI tax ID(s): 1869227 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 8.1 (current version)

General

@ref: 64326

BacDive-ID: 157755

DSM-Number: 105095

keywords: genome sequence, mesophilic

description: unclassified bacterium Melo94 is a mesophilic prokaryote that was isolated from Conjunctiva, conjunctivitis.

NCBI tax id

  • NCBI tax id: 1869227
  • Matching level: species

strain history

  • @ref: 64326
  • history: <- N. Norskov-Lauritsen, Aarhus Univ. Hospital, Dept. of Clinical Microbiol.; Melo94 <- A. Zbinden, Univ. Zurich, Switzerland; Melo94

doi: 10.13145/bacdive157755.20230509.8.1

Name and taxonomic classification

@ref: 64326

phylum: Not assigned to order

class: Not assigned to order

order: Clostridiales

family: Not assigned to family

genus: unclassified

species: unclassified bacterium

full scientific name: unclassified bacterium

strain designation: Melo94

type strain: no

Culture and growth conditions

culture medium

  • @ref: 64326
  • name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/693
  • composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 64326
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837717634D-glucose+builds acid from
6837715824D-fructose+builds acid from
6837717306maltose+builds acid from
6837717992sucrose+builds acid from
6837718257ornithine-degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase+2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase+3.2.1.23
68377alkaline phosphatase+3.1.3.1
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17
68377beta-lactamase-3.5.2.6

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
64326-++++---++-+-

Isolation, sampling and environmental information

isolation

  • @ref: 64326
  • sample type: Conjunctiva, conjunctivitis
  • geographic location: Zürich
  • country: Switzerland
  • origin.country: CHE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Organ#Eye
#Infection#Inflammation

Sequence information

Genome sequences

  • @ref: 66792
  • description: Aggregatibacter sp. Melo94
  • accession: 1344071.3
  • assembly level: wgs
  • database: patric
  • NCBI tax ID: 2025884

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno90.167no
gram-positiveno98.411no
anaerobicno96.198no
halophileno58.494no
spore-formingno98.478no
thermophileno97.95no
glucose-utilno51.18no
aerobicno93.753no
flagellatedno95.239no
glucose-fermentyes57.661no

External links

@ref: 64326

culture collection no.: DSM 105095

Reference

@idauthorscataloguedoi/urltitle
64326Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105095)https://www.dsmz.de/collection/catalogue/details/culture/DSM-105095
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68377Automatically annotated from API NH