Strain identifier

BacDive ID: 157752

Type strain: Yes

Species: Macrococcus goetzii

Strain Designation: NRL/St 00/957

Strain history: <- C. Sedlacek; CCM 4927 <- Army Hospital, Ceské Budejovice

NCBI tax ID(s): 1891097 (species)

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General

@ref: 64321

BacDive-ID: 157752

DSM-Number: 103683

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive

description: Macrococcus goetzii NRL/St 00/957 is a mesophilic, Gram-positive bacterium that was isolated from skin smear.

NCBI tax id

  • NCBI tax id: 1891097
  • Matching level: species

strain history

  • @ref: 64321
  • history: <- C. Sedlacek; CCM 4927 <- Army Hospital, Ceské Budejovice

doi: 10.13145/bacdive157752.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Macrococcus
  • species: Macrococcus goetzii
  • full scientific name: Macrococcus goetzii Mašla?ová et al. 2018

  • synonyms

    • @ref: 20215
    • synonym: Macrococcoides goetzii

@ref: 64321

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Clostridiales

family: Staphylococcaceae

genus: Macrococcus

species: Macrococcus goetzii

full scientific name: Macrococcus goetzii Mašla?ová et al. 2018

strain designation: NRL/St 00/957

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
64321COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf
64321TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 64321
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.04

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837516199urea-hydrolysis
6837529016arginine-hydrolysis
6837518257ornithine-degradation
683754853esculin+hydrolysis
6837517634D-glucose-fermentation
6837515824D-fructose+fermentation
6837516024D-mannose-fermentation
6837517716lactose+fermentation
6837527082trehalose-fermentation
6837516899D-mannitol-fermentation
6837516634raffinose-fermentation
6837516988D-ribose-fermentation
6837517057cellobiose-fermentation
6837517632nitrate+reduction
6837517992sucrose+fermentation
6837559640N-acetylglucosamine-fermentation
6837532528turanose-fermentation
6837522599arabinose-fermentation

metabolite production

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68375beta-glucuronidase-3.2.1.31
68375pyrrolidonyl arylamidase-3.4.19.3
68375alkaline phosphatase-3.1.3.1
68375L-arginine arylamidase-
68375beta-galactosidase+3.2.1.23
68375beta-glucosidase+3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase-3.5.3.6
68375urease-3.5.1.5

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
64321---+-+-+/-+-----+-+---+/-+----

Isolation, sampling and environmental information

isolation

  • @ref: 64321
  • sample type: skin smear
  • geographic location: Ceské Budejovice
  • country: Czech Republic
  • origin.country: CZE
  • continent: Europe

isolation source categories

  • Cat1: #Host Body-Site
  • Cat2: #Organ
  • Cat3: #Skin, Nail, Hair

taxonmaps

  • @ref: 69479
  • File name: preview.99_2313.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1248;97_1481;98_1805;99_2313&stattab=map
  • Last taxonomy: Macrococcus
  • 16S sequence: MH044690
  • Sequence Identity:
  • Total samples: 10750
  • soil counts: 1069
  • aquatic counts: 930
  • animal counts: 8379
  • plant counts: 372

Sequence information

16S sequences

  • @ref: 64321
  • description: Macrococcus goetzii strain CCM 4927 16S ribosomal RNA gene, partial sequence
  • accession: MH044690
  • length: 1560
  • database: ena
  • NCBI tax ID: 1891097

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Macrococcus goetzii CCM 4927GCA_002742385contigncbi1891097
66792Macrococcus sp. CCM 49271891097.3wgspatric1891097
66792Macrococcus goetzii CCM 49272882262529draftimg1891097

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes87no
motileno88.623no
gram-positiveyes94.064no
anaerobicno97.04no
aerobicyes79.756no
halophileyes88.002no
spore-formingno79.28no
glucose-utilyes86.333no
flagellatedno90.518no
thermophileno99.712yes
glucose-fermentno74.195yes

External links

@ref: 64321

culture collection no.: DSM 103683, CCM 4927

literature

topicPubmed-IDtitleauthorsjournalDOIyeartopic2mesh
Genetics29951040Description and Comparative Genomics of Macrococcus caseolyticus subsp. hominis subsp. nov., Macrococcus goetzii sp. nov., Macrococcus epidermidis sp. nov., and Macrococcus bohemicus sp. nov., Novel Macrococci From Human Clinical Material With Virulence Potential and Suspected Uptake of Foreign DNA by Natural Transformation.Maslanova I, Wertheimer Z, Sedlacek I, Svec P, Indrakova A, Kovarovic V, Schumann P, Sproer C, Kralova S, Sedo O, Kristofova L, Vrbovska V, Fuzik T, Petras P, Zdrahal Z, Ruzickova V, Doskar J, Pantucek RFront Microbiol10.3389/fmicb.2018.011782018Phylogeny
Pathogenicity31243455Macrococcus canis contains recombinogenic methicillin resistance elements and the mecB plasmid found in Staphylococcus aureus.Chanchaithong P, Perreten V, Schwendener SJ Antimicrob Chemother10.1093/jac/dkz2602019GeneticsAnimals, Bacterial Proteins/*genetics, Dog Diseases/*microbiology, Dogs, Methicillin Resistance/*genetics, Operon/genetics, Otitis Externa/microbiology/*veterinary, Plasmids/genetics, Staphylococcaceae/drug effects/*genetics, Staphylococcal Infections/microbiology/*veterinary, Staphylococcus aureus/drug effects/*genetics, Whole Genome Sequencing

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64321Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103683Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103683)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68375Automatically annotated from API ID32STA
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes