Strain identifier
BacDive ID: 157751
Type strain: 
Species: Macrococcus caseolyticus subsp. hominis
Strain Designation: NRL/St 03/628
Strain history: <- I. Sedlácek; CCM 7927 <- P. Jezek and P. Petras, Public hospital, Pribram, Czech Republic
NCBI tax ID(s): 1891096 (subspecies)
version 8.1 (current version)
General
@ref: 64320
BacDive-ID: 157751
DSM-Number: 103682
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive
description: Macrococcus caseolyticus subsp. hominis NRL/St 03/628 is a mesophilic, Gram-positive bacterium that was isolated from vaginal smear.
NCBI tax id
- NCBI tax id: 1891096
- Matching level: subspecies
strain history
- @ref: 64320
- history: <- I. Sedlácek; CCM 7927 <- P. Jezek and P. Petras, Public hospital, Pribram, Czech Republic
doi: 10.13145/bacdive157751.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Staphylococcaceae
- genus: Macrococcus
- species: Macrococcus caseolyticus subsp. hominis
- full scientific name: Macrococcus caseolyticus subsp. hominis Mašla?ová et al. 2018
synonyms
- @ref: 20215
- synonym: Macrococcoides caseolyticus subsp. hominis
@ref: 64320
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Clostridiales
family: Staphylococcaceae
genus: Macrococcus
species: Macrococcus caseolyticus subsp. hominis
full scientific name: Macrococcus caseolyticus subsp. hominis Mašla?ová et al. 2018
strain designation: NRL/St 03/628
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture medium
- @ref: 64320
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 64320
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.898
Isolation, sampling and environmental information
isolation
- @ref: 64320
- sample type: vaginal smear
- geographic location: Ceske Budejovice
- country: Czech Republic
- origin.country: CZE
- continent: Europe
isolation source categories
- Cat1: #Host Body-Site
- Cat2: #Urogenital tract
- Cat3: #Vagina
taxonmaps
- @ref: 69479
- File name: preview.99_2313.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1248;97_1481;98_1805;99_2313&stattab=map
- Last taxonomy: Macrococcus
- 16S sequence: MH044686
- Sequence Identity:
- Total samples: 10750
- soil counts: 1069
- aquatic counts: 930
- animal counts: 8379
- plant counts: 372
Sequence information
16S sequences
- @ref: 64320
- description: Macrococcus caseolyticus subsp. hominis strain CCM 7927 16S ribosomal RNA gene, partial sequence
- accession: MH044686
- length: 1561
- database: ena
- NCBI tax ID: 1891096
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Macrococcus caseolyticus subsp. hominis CCM 7927 | GCA_002742395 | contig | ncbi | 1891096 |
| 66792 | Macrococcus sp. CCM 7927 | 1891096.3 | wgs | patric | 1891096 |
| 66792 | Macrococcus caseolyticus hominis CCM 7927 | 2898314673 | draft | img | 1891096 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 77 | no |
| motile | no | 89.185 | no |
| gram-positive | yes | 94.508 | no |
| anaerobic | no | 98.931 | no |
| aerobic | yes | 90.292 | no |
| halophile | yes | 91.358 | no |
| spore-forming | no | 84.385 | no |
| glucose-util | yes | 88.47 | no |
| flagellated | no | 92.947 | no |
| thermophile | no | 99.268 | yes |
| glucose-ferment | no | 70.409 | no |
External links
@ref: 64320
culture collection no.: DSM 103682, CCM 7927
straininfo link
- @ref: 110615
- straininfo: 405094
literature
- topic: Genetics
- Pubmed-ID: 29951040
- title: Description and Comparative Genomics of Macrococcus caseolyticus subsp. hominis subsp. nov., Macrococcus goetzii sp. nov., Macrococcus epidermidis sp. nov., and Macrococcus bohemicus sp. nov., Novel Macrococci From Human Clinical Material With Virulence Potential and Suspected Uptake of Foreign DNA by Natural Transformation.
- authors: Maslanova I, Wertheimer Z, Sedlacek I, Svec P, Indrakova A, Kovarovic V, Schumann P, Sproer C, Kralova S, Sedo O, Kristofova L, Vrbovska V, Fuzik T, Petras P, Zdrahal Z, Ruzickova V, Doskar J, Pantucek R
- journal: Front Microbiol
- DOI: 10.3389/fmicb.2018.01178
- year: 2018
- topic2: Phylogeny
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 64320 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103682 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103682) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 110615 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405094.1 |