Strain identifier
BacDive ID: 157741
Type strain: 
Species: Anaerostipes amylophilus
Strain Designation: H1-26, H1_26
Strain history: <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; H1_26
NCBI tax ID(s): 1872530 (species)
General
@ref: 64310
BacDive-ID: 157741
DSM-Number: 108065
keywords: genome sequence, Bacteria, mesophilic
description: Anaerostipes amylophilus H1-26 is a mesophilic bacterium that was isolated from human faeces.
NCBI tax id
- NCBI tax id: 1872530
- Matching level: species
strain history
- @ref: 64310
- history: <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; H1_26
doi: 10.13145/bacdive157741.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Lachnospiraceae
- genus: Anaerostipes
- species: Anaerostipes amylophilus
- full scientific name: Anaerostipes amylophilus Hitch et al. 2022
@ref: 64310
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Lachnospiraceae
genus: Anaerostipes
species: Anaerostipes amylophilus
full scientific name: Anaerostipes amylophilus Hitch et al. 2022
strain designation: H1-26, H1_26
type strain: yes
Culture and growth conditions
culture medium
- @ref: 64310
- name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1203a
- composition: Name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Distilled water
culture temp
- @ref: 64310
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 64310
- sample type: human faeces
- geographic location: Cambridgeshire, Hinxton
- country: United Kingdom
- origin.country: GBR
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Safety information
risk assessment
- @ref: 64310
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Anaerostipes amylophilus H1_26
- accession: GCA_025567365
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 2981779
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 90.428 | no |
| flagellated | no | 94.033 | no |
| gram-positive | yes | 89.988 | no |
| anaerobic | yes | 99.483 | no |
| aerobic | no | 99.142 | no |
| halophile | no | 60.308 | no |
| spore-forming | no | 70.643 | no |
| glucose-ferment | yes | 64.464 | no |
| thermophile | no | 95.745 | yes |
| glucose-util | yes | 90.791 | no |
External links
@ref: 64310
culture collection no.: DSM 108065, JCM 34801
straininfo link
- @ref: 110609
- straininfo: 397529
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 64310 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-108065 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108065) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 110609 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397529.1 |