Strain identifier

BacDive ID: 157726

Type strain: No

Species: Escherichia coli

Strain Designation: 1853068, PEG-13-105-37

Strain history: <- M. Kresken, Antiinfectives Intelligence, Gesellschaft für klinisch-mikrobiologische Forschung und Kommunikation mbH

NCBI tax ID(s): 562 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 64295

BacDive-ID: 157726

DSM-Number: 105389

keywords: antibiotic resistance, mesophilic, Bacteria, human pathogen

description: Escherichia coli 1853068 is a mesophilic human pathogen that has multiple antibiotic resistances and was isolated from urine.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

strain history: <- M. Kresken, Antiinfectives Intelligence, Gesellschaft für klinisch-mikrobiologische Forschung und Kommunikation mbH

doi: 10.13145/bacdive157726.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 64295

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919

strain designation: 1853068, PEG-13-105-37

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
64295LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)yeshttps://bacmedia.dsmz.de/medium/381Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water
64295TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://bacmedia.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 64295
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

antibiogram

  • @ref: 64295
  • medium: Mueller-Hinton Agar
  • incubation temperature: 37
  • oxygen condition: aerob
  • Penicillin G: 0
  • oxacillin: 0
  • ampicillin: 0
  • ticarcillin: 0
  • mezlocillin: 8-10
  • cefalotin: 0
  • cefazolin: 0
  • cefotaxime: 12
  • aztreonam: 18
  • imipenem: 40-42
  • tetracycline: 14
  • chloramphenicol: 34
  • gentamycin: 26
  • amikacin: 28-30
  • vancomycin: 12
  • erythromycin: 12
  • lincomycin: 0
  • ofloxacin: 8-10
  • norfloxacin: 8-10
  • colistin: 16-18
  • pipemidic acid: 0
  • nitrofurantoin: 28
  • bacitracin: 10
  • polymyxin b: 18
  • kanamycin: 26-28
  • neomycin: 22
  • doxycycline: 30
  • ceftriaxone: 12
  • clindamycin: 0
  • fosfomycin: 22
  • moxifloxacin: 0
  • linezolid: n.d.
  • nystatin: 0
  • quinupristin/dalfopristin: 0
  • teicoplanin: n.d.
  • piperacillin/tazobactam: 26-28

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin-fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole+

enzymes

@refvalueactivityec
68368cytochrome oxidase+1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
64295+-++----++-++-++++-++

Isolation, sampling and environmental information

isolation

  • @ref: 64295
  • sample type: urine
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

  • Cat1: #Host Body Product
  • Cat2: #Fluids
  • Cat3: #Urine

Safety information

risk assessment

  • @ref: 64295
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

External links

@ref: 64295

culture collection no.: DSM 105389

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64295Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-105389Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105389)
68368Automatically annotated from API 20E