Strain identifier

BacDive ID: 157717

Type strain: No

Species: Escherichia coli

Strain Designation: PEG-13-53-6, vk 48022

Strain history: <- M. Kresken, Antiinfectives Intelligence, Gesellschaft für klinisch-mikrobiologische Forschung und Kommunikation mbH

NCBI tax ID(s): 562 (species)

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General

@ref: 64286

BacDive-ID: 157717

DSM-Number: 105380

keywords: Bacteria, mesophilic, antibiotic resistance, human pathogen

description: Escherichia coli PEG-13-53-6 is a mesophilic human pathogen that has multiple antibiotic resistances and was isolated from blood.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

strain history

  • @ref: 64286
  • history: <- M. Kresken, Antiinfectives Intelligence, Gesellschaft für klinisch-mikrobiologische Forschung und Kommunikation mbH

doi: 10.13145/bacdive157717.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 64286

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919

strain designation: PEG-13-53-6, vk 48022

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
64286LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)yeshttps://mediadive.dsmz.de/medium/381Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water
64286TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 64286
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

antibiogram

  • @ref: 64286
  • medium: Mueller-Hinton Agar
  • incubation temperature: 37
  • oxygen condition: aerob
  • Penicillin G: 0
  • oxacillin: 0
  • ampicillin: 0
  • ticarcillin: 0
  • mezlocillin: 0
  • cefalotin: 0
  • cefazolin: 0
  • cefotaxime: 16
  • aztreonam: 24
  • imipenem: 32-34
  • tetracycline: 6
  • chloramphenicol: 26-28
  • gentamycin: 6
  • amikacin: 18
  • vancomycin: 0
  • erythromycin: 0
  • lincomycin: 0
  • ofloxacin: 22
  • norfloxacin: 24-26
  • colistin: 14
  • pipemidic acid: 12
  • nitrofurantoin: 26
  • bacitracin: 0
  • polymyxin b: 14-16
  • kanamycin: 20
  • neomycin: 20
  • doxycycline: 10-12
  • ceftriaxone: 12-14
  • clindamycin: 0
  • fosfomycin: 36
  • moxifloxacin: 24
  • linezolid: 0
  • nystatin: 0
  • quinupristin/dalfopristin: 0
  • teicoplanin: 0
  • piperacillin/tazobactam: 26

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836917634D-glucose+fermentation
6836927897tryptophan+energy source
6836917632nitrate+reduction
6836817632nitrate+reduction
6836830849L-arabinose+fermentation
6836828053melibiose-fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine+degradation
6836825094lysine-degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleyes
6836816301nitriteyes
6836815688acetoinyes
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-test
6836935581indole+
6836815688acetoin+
6836835581indole+

enzymes

@refvalueactivityec
68369cytochrome oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOXNO2
64286++-+----++-++-+++--+-+
64286++-+---+++-++-+++-++-

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
64286++++/--+-+-+--++/-+--+---

Isolation, sampling and environmental information

isolation

  • @ref: 64286
  • sample type: blood
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Fluids#Blood
#Infection#Patient

Safety information

risk assessment

  • @ref: 64286
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

External links

@ref: 64286

culture collection no.: DSM 105380

straininfo link

  • @ref: 110585
  • straininfo: 401105

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64286Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-105380Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105380)
68368Automatically annotated from API 20E
68369Automatically annotated from API 20NE
110585Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401105.1