Strain identifier

BacDive ID: 157713

Type strain: No

Species: Escherichia coli

Strain Designation: 130, PEG-13-49-74

Strain history: <- M. Kresken, Antiinfectives Intelligence, Gesellschaft für klinisch-mikrobiologische Forschung und Kommunikation mbH

NCBI tax ID(s): 562 (species)

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General

@ref: 64282

BacDive-ID: 157713

DSM-Number: 105376

keywords: genome sequence, Bacteria, mesophilic, antibiotic resistance, human pathogen

description: Escherichia coli 130 is a mesophilic human pathogen that has multiple antibiotic resistances.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

strain history

  • @ref: 64282
  • history: <- M. Kresken, Antiinfectives Intelligence, Gesellschaft für klinisch-mikrobiologische Forschung und Kommunikation mbH

doi: 10.13145/bacdive157713.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 64282

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919

strain designation: 130, PEG-13-49-74

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
64282LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)yeshttps://mediadive.dsmz.de/medium/381Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water
64282TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 64282
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

antibiogram

  • @ref: 64282
  • medium: Mueller-Hinton Agar
  • incubation temperature: 37
  • oxygen condition: aerob
  • Penicillin G: 0
  • oxacillin: 0
  • ampicillin: 0
  • ticarcillin: 8
  • mezlocillin: 14-16
  • cefalotin: 12
  • cefazolin: 14
  • cefotaxime: 28
  • aztreonam: 32
  • imipenem: 32-34
  • tetracycline: 24
  • chloramphenicol: 26-28
  • gentamycin: 22
  • amikacin: 20
  • vancomycin: 0
  • erythromycin: 0
  • lincomycin: 0
  • ofloxacin: 0
  • norfloxacin: 0
  • colistin: 14
  • pipemidic acid: 0
  • nitrofurantoin: 22
  • bacitracin: 0
  • polymyxin b: 14-16
  • kanamycin: 12
  • neomycin: 18
  • doxycycline: 22
  • ceftriaxone: 26
  • clindamycin: 0
  • fosfomycin: 34
  • moxifloxacin: 0
  • linezolid: 0
  • nystatin: 0
  • quinupristin/dalfopristin: 0
  • teicoplanin: 0
  • piperacillin/tazobactam: 22

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836817632nitrate+reduction
6836830849L-arabinose+fermentation
6836827613amygdalin-fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836816301nitriteyes
6836815688acetoinyes
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole+

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOXNO2
64282+-++----++-++-++++/--+-+

Isolation, sampling and environmental information

isolation

  • @ref: 64282
  • country: Germany
  • origin.country: DEU
  • continent: Europe

Safety information

risk assessment

  • @ref: 64282
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Escherichia coli 130
  • accession: GCA_005221745
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 562

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes87.23no
flagellatedno57.476no
gram-positiveno97.991no
anaerobicno94.567no
aerobicyes84.22no
halophileno90.793no
spore-formingno93.878no
glucose-utilyes94.235no
thermophileno99.095yes
glucose-fermentyes93.268yes

External links

@ref: 64282

culture collection no.: DSM 105376

straininfo link

  • @ref: 110581
  • straininfo: 405149

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64282Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-105376Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105376)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
110581Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405149.1