Strain identifier

BacDive ID: 157648

Type strain: No

Species: Campylobacter pylori

Strain Designation: G27

Strain history: <- M. Gerhard, Institut für Medizinische Mikrobiologie, Immunologie und Hygiene,Technische Universität München <- N. Figura, Univ. Siena, Italy

NCBI tax ID(s): 210 (species)

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General

@ref: 64217

BacDive-ID: 157648

DSM-Number: 105292

keywords: genome sequence, Bacteria, mesophilic

description: Campylobacter pylori G27 is a mesophilic bacterium that was isolated from clinical isolate.

NCBI tax id

  • NCBI tax id: 210
  • Matching level: species

strain history

  • @ref: 64217
  • history: <- M. Gerhard, Institut für Medizinische Mikrobiologie, Immunologie und Hygiene,Technische Universität München <- N. Figura, Univ. Siena, Italy

doi: 10.13145/bacdive157648.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter pylori
  • full scientific name: Campylobacter pylori corrig. Marshall et al. 1985

  • synonyms

    @refsynonym
    20215Campylobacter pyloridis
    20215Helicobacter pylori
    20215Helicobacter nemestrinae

@ref: 64217

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Helicobacteraceae

genus: Helicobacter

species: Helicobacter pylori

full scientific name: Helicobacter pylori (Marshall et al. 1985) Goodwin et al. 1989

strain designation: G27

type strain: no

Culture and growth conditions

culture medium

  • @ref: 64217
  • name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/693
  • composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 64217
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837316199urea+hydrolysis
68373606565hippurate-hydrolysis
6837378019triphenyltetrazolium chloride+reduction
6837330031succinate-assimilation
6837330089acetate-assimilation
6837317272propionate-assimilation
6837325115malate-assimilation
6837316947citrate-assimilation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.
6837348923erythromycinyesyes14 µg
68373474053cefazolinyesyes224 µg
68373100147nalidixic acidyesyes84 µg

metabolite production

  • @ref: 68373
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: no

enzymes

@refvalueactivityec
68373catalase+1.11.1.6
68373alkaline phosphatase+3.1.3.1
68373L-aspartate arylamidase-3.4.11.21
68373L-arginine arylamidase-
68373pyrrolidonyl arylamidase-3.4.19.3
68373gamma-glutamyltransferase+2.3.2.2
68373esterase-
68373urease+3.5.1.5

API CAM

@refURENITESTGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROHIPCAT
64217+--++---+----------
64217++-++---+-+---------+

Isolation, sampling and environmental information

isolation

  • @ref: 64217
  • sample type: clinical isolate
  • geographic location: Grosseto
  • country: Italy
  • origin.country: ITA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Infection#Medical environment#Clinic
#Infection#Patient
#Infection#Patient#Specimen

Safety information

risk assessment

  • @ref: 64217
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Helicobacter pylori strain FDAARGOS_1563210.8697completepatric210
66792Helicobacter pylori strain FDAARGOS_1563210.8537completepatric210

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes89.207no
gram-positiveno99.026no
anaerobicno88.059no
aerobicno97.166no
halophileno83.719no
spore-formingno96.544no
glucose-utilno74.24no
flagellatedno58.27no
thermophileno55.332no
glucose-fermentno81.572no

External links

@ref: 64217

culture collection no.: DSM 105292

straininfo link

  • @ref: 110517
  • straininfo: 401537

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64217Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-105292Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105292)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68373Automatically annotated from API CAM
110517Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401537.1