Workshop and Q&A October 6th

Strain identifier

BacDive ID: 157646

Type strain: No

Species: Campylobacter pylori

Strain Designation: 86153

Strain history: <- M. Gerhard, Institut für Medizinische Mikrobiologie, Immunologie und Hygiene, Technische Universität München

NCBI tax ID(s): 210 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 64215

BacDive-ID: 157646

DSM-Number: 105260

keywords: mesophilic, Bacteria

description: Campylobacter pylori 86153 is a mesophilic bacterium that was isolated from patient, specimen.

NCBI tax id

  • NCBI tax id: 210
  • Matching level: species

strain history: <- M. Gerhard, Institut für Medizinische Mikrobiologie, Immunologie und Hygiene, Technische Universität München

doi: 10.13145/bacdive157646.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter pylori
  • full scientific name: Campylobacter pylori corrig. Marshall et al. 1985
  • synonyms

    @refsynonym
    20215Campylobacter pyloridis
    20215Helicobacter pylori
    20215Helicobacter nemestrinae

@ref: 64215

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Helicobacteraceae

genus: Helicobacter

species: Helicobacter pylori

full scientific name: Helicobacter pylori (Marshall et al. 1985) Goodwin et al. 1989

strain designation: 86153

type strain: no

Culture and growth conditions

culture medium

  • @ref: 64215
  • name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/693
  • composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 64215
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837316947citrate-assimilation
6837325115malate-assimilation
6837317272propionate-assimilation
6837330089acetate-assimilation
6837330031succinate-assimilation
6837317634D-glucose-assimilation
6837378019triphenyltetrazolium chloride+reduction
68373606565hippurate-hydrolysis
6837317632nitrate-reduction
6837316199urea+hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.
6837348923erythromycinyesyes14 µg
68373474053cefazolinyesyes224 µg
68373100147nalidixic acidyesyes84 µg

metabolite production

  • @ref: 68373
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: no

enzymes

@refvalueactivityec
68373alkaline phosphatase+3.1.3.1
68373L-aspartate arylamidase-3.4.11.21
68373L-arginine arylamidase-
68373pyrrolidonyl arylamidase-3.4.19.3
68373gamma-glutamyltransferase+2.3.2.2
68373esterase-
68373urease+3.5.1.5

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITERO
64215+---++---+----------

Isolation, sampling and environmental information

isolation

  • @ref: 64215
  • sample type: patient, specimen
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

  • Cat1: #Infection
  • Cat2: #Patient
  • Cat3: #Specimen

Safety information

risk assessment

  • @ref: 64215
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

External links

@ref: 64215

culture collection no.: DSM 105260

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64215Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-105260Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105260)
68373Automatically annotated from API CAM