Strain identifier

BacDive ID: 157629

Type strain: No

Species: Bifidobacterium adolescentis

Strain Designation: ORG 4, ORG4

Strain history: <- P. Mattarelli; ORG4 <- M. Modesto, Dept. Agricul. Scs., Univ. Bologna, Italy <- M. R. D'Aimmo, Chalmers Univ. of Technol., Dept. of Chemical and Biological Eng., Gothenburg, Sweden

NCBI tax ID(s): 1680 (species)

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General

@ref: 64198

BacDive-ID: 157629

DSM-Number: 28529

keywords: 16S sequence, Bacteria, mesophilic

description: Bifidobacterium adolescentis ORG 4 is a mesophilic bacterium that was isolated from orangutan faeces.

NCBI tax id

  • NCBI tax id: 1680
  • Matching level: species

strain history

  • @ref: 64198
  • history: <- P. Mattarelli; ORG4 <- M. Modesto, Dept. Agricul. Scs., Univ. Bologna, Italy <- M. R. D'Aimmo, Chalmers Univ. of Technol., Dept. of Chemical and Biological Eng., Gothenburg, Sweden

doi: 10.13145/bacdive157629.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Bifidobacteriales
  • family: Bifidobacteriaceae
  • genus: Bifidobacterium
  • species: Bifidobacterium adolescentis
  • full scientific name: Bifidobacterium adolescentis Reuter 1963 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bifidobacterium stercoris

@ref: 64198

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Bifidobacteriales

family: Bifidobacteriaceae

genus: Bifidobacterium

species: Bifidobacterium adolescentis

full scientific name: Bifidobacterium adolescentis Reuter 1963 emend. Nouioui et al. 2018

strain designation: ORG 4, ORG4

type strain: no

Culture and growth conditions

culture medium

  • @ref: 64198
  • name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/58
  • composition: Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water

culture temp

  • @ref: 64198
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371turanose+builds acid from32528
68371D-lyxose-builds acid from62318
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371starch+builds acid from28017
68371raffinose+builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371melibiose+builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371esculin+builds acid from4853
68371amygdalin+builds acid from27613
68371arbutin+builds acid from18305
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol+builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
68371glycogen+builds acid from28087
68371sucrose+builds acid from17992
68371salicin+builds acid from17814
68371methyl alpha-D-glucopyranoside+builds acid from320061
68371L-xylose-builds acid from65328
68371L-arabinose+builds acid from30849

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
64198----+++---+++-----++-+-++++++++++--+++-++---------

Isolation, sampling and environmental information

isolation

  • @ref: 64198
  • sample type: orangutan faeces
  • geographic location: Borås Djurpark
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Host#Mammals#Primates

Safety information

risk assessment

  • @ref: 64198
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 64198
  • description: Bifidobacterium adolescentis strain ORG4 16S ribosomal RNA gene, partial sequence
  • accession: KF468644
  • length: 849
  • database: nuccore
  • NCBI tax ID: 1680

External links

@ref: 64198

culture collection no.: DSM 28529

straininfo link

  • @ref: 110498
  • straininfo: 406870

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64198Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28529Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28529)
68371Automatically annotated from API 50CH acid
110498Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID406870.1