Strain identifier
BacDive ID: 1573
Type strain: 
Species: Alteribacillus bidgolensis
Strain Designation: P4B
Strain history: <- M A Amoozegar, Univ. of Tehran, Iran
NCBI tax ID(s): 930129 (species)
version 8.1 (current version)
General
@ref: 17959
BacDive-ID: 1573
DSM-Number: 25260
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, rod-shaped
description: Alteribacillus bidgolensis P4B is an aerobe, spore-forming, mesophilic bacterium that was isolated from water from a hypersaline lake.
NCBI tax id
- NCBI tax id: 930129
- Matching level: species
strain history
| @ref | history |
|---|---|
| 17959 | <- M. A. Amoozegar, Univ. Tehran, Iran; P4B <- M. Bagheri |
| 67771 | <- M A Amoozegar, Univ. of Tehran, Iran |
doi: 10.13145/bacdive1573.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Alteribacillus
- species: Alteribacillus bidgolensis
- full scientific name: Alteribacillus bidgolensis Didari et al. 2012
@ref: 17959
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Alteribacillus
species: Alteribacillus bidgolensis
full scientific name: Alteribacillus bidgolensis Didari et al. 2012
strain designation: P4B
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 30351 | positive | 2.45 µm | 0.85 µm | rod-shaped | no | |
| 67771 | rod-shaped | no | ||||
| 67771 | positive | |||||
| 69480 | positive | 100 |
pigmentation
- @ref: 30351
- production: yes
Culture and growth conditions
culture medium
- @ref: 17959
- name: MEDIUM 514 PLUS ADDITIONAL SALT (DSMZ Medium 514b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514b
- composition: Name: MEDIUM 514 plus additional salt (DSMZ Medium 514b; with strain-specific modifications) Composition: NaCl 50.0 g/l Agar 17.5 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 17959 | positive | growth | 30 | mesophilic |
| 30351 | positive | growth | 25-40 | |
| 30351 | positive | optimum | 35 | mesophilic |
| 67771 | positive | growth | 35 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30351 | positive | growth | 6.5-10 | alkaliphile |
| 30351 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 30351 | aerobe |
| 67771 | aerobe |
spore formation
| @ref | spore formation | type of spore | confidence |
|---|---|---|---|
| 30351 | yes | ||
| 67771 | yes | endospore | |
| 69481 | yes | 100 | |
| 69480 | yes | 100 |
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30351 | NaCl | positive | growth | 0.5-12.5 % |
| 30351 | NaCl | positive | optimum | 6.25 % |
observation
- @ref: 67771
- observation: quinones: MK-7, MK-8
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30351 | 22599 | arabinose | + | carbon source |
| 30351 | 29016 | arginine | + | carbon source |
| 30351 | 22653 | asparagine | + | carbon source |
| 30351 | 17057 | cellobiose | + | carbon source |
| 30351 | 16947 | citrate | + | carbon source |
| 30351 | 28757 | fructose | + | carbon source |
| 30351 | 17234 | glucose | + | carbon source |
| 30351 | 17754 | glycerol | + | carbon source |
| 30351 | 27570 | histidine | + | carbon source |
| 30351 | 25017 | leucine | + | carbon source |
| 30351 | 29864 | mannitol | + | carbon source |
| 30351 | 16634 | raffinose | + | carbon source |
| 30351 | 33942 | ribose | + | carbon source |
| 30351 | 17992 | sucrose | + | carbon source |
| 30351 | 27082 | trehalose | + | carbon source |
| 30351 | 17632 | nitrate | + | reduction |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30351 | catalase | + | 1.11.1.6 |
| 30351 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 17959 | water from a hypersaline lake | Aran-Bidgol lake | Iran | IRN | Asia |
| 67771 | From water from a hypersaline lake | Aran-Bidgol Salt Lake | Iran | IRN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_20885.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_605;96_10605;97_12823;98_15776;99_20885&stattab=map
- Last taxonomy: Alteribacillus bidgolensis subclade
- 16S sequence: HQ433453
- Sequence Identity:
- Total samples: 14
- soil counts: 5
- animal counts: 7
- plant counts: 2
Safety information
risk assessment
- @ref: 17959
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17959
- description: Alteribacillus bidgolensis strain P4B 16S ribosomal RNA gene, partial sequence
- accession: HQ433453
- length: 1486
- database: ena
- NCBI tax ID: 930129
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Alteribacillus bidgolensis DSM 25260 | GCA_002886255 | scaffold | ncbi | 930129 |
| 66792 | Alteribacillus bidgolensis P4B,CCM 7963,CECT 7998,DSM 25260,IBRC-M 10614,KCTC 13821 | GCA_900099745 | scaffold | ncbi | 930129 |
| 66792 | Alteribacillus bidgolensis strain DSM 25260 | 930129.8 | wgs | patric | 930129 |
| 66792 | Alteribacillus bidgolensis strain P4B,CCM 7963,CECT 7998,DSM 25260,IBRC-M 10614,KCTC 13821 | 930129.4 | wgs | patric | 930129 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 17959 | 38.9 | high performance liquid chromatography (HPLC) |
| 30351 | 38.9 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| flagellated | no | 56.214 | no |
| gram-positive | yes | 91.993 | yes |
| anaerobic | no | 98.238 | no |
| aerobic | yes | 93.62 | yes |
| halophile | yes | 89.955 | yes |
| spore-forming | yes | 92.118 | no |
| thermophile | no | 99.101 | yes |
| glucose-util | yes | 90.583 | yes |
| motile | no | 50.654 | yes |
| glucose-ferment | no | 90.846 | no |
External links
@ref: 17959
culture collection no.: DSM 25260, CCM 7963, CECT 7998, IBRC-M 10614, KCTC 13821
straininfo link
- @ref: 71218
- straininfo: 377925
literature
- topic: Phylogeny
- Pubmed-ID: 22228653
- title: Alteribacillus bidgolensis gen. nov., sp. nov., a moderately halophilic bacterium from a hypersaline lake, and reclassification of Bacillus persepolensis as Alteribacillus persepolensis comb. nov.
- authors: Didari M, Amoozegar MA, Bagheri M, Schumann P, Sproer C, Sanchez-Porro C, Ventosa A
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.034173-0
- year: 2012
- mesh: Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Iran, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, *Water Microbiology
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
|---|---|---|---|---|---|---|---|
| 17959 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25260) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25260 | ||||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
| 30351 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26692 | 28776041 | ||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | |||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | ||||
| 71218 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID377925.1 | StrainInfo: A central database for resolving microbial strain identifiers |