Strain identifier

BacDive ID: 157233

Type strain: Yes

Species: Bifidobacterium parmae

Strain history: LMG 30295 <-- M. Ventura; Dept. of Chem., Univ. of Parma, Italy; Uis4E.

NCBI tax ID(s): 361854 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 63773

BacDive-ID: 157233

keywords: genome sequence, Bacteria, anaerobe, mesophilic

description: Bifidobacterium parmae CCUG 70964 is an anaerobe, mesophilic bacterium that was isolated from Faeces,Callithrix pygmaea.

NCBI tax id

  • NCBI tax id: 361854
  • Matching level: species

strain history

  • @ref: 67770
  • history: LMG 30295 <-- M. Ventura; Dept. of Chem., Univ. of Parma, Italy; Uis4E.

doi: 10.13145/bacdive157233.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Bifidobacteriales
  • family: Bifidobacteriaceae
  • genus: Bifidobacterium
  • species: Bifidobacterium parmae
  • full scientific name: Bifidobacterium parmae Lugli et al. 2018

@ref: 63773

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Bifidobacteriales

family: Bifidobacteriaceae

genus: Bifidobacterium

species: Bifidobacterium parmae

type strain: yes

Morphology

colony morphology

  • @ref: 63773
  • incubation period: 2 days

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
63773positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 63773
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinenthost species
63773Faeces,Callithrix pygmaea2014-09-14Emilia Romagna,ParmaItalyITAEurope
67770Stool sample of a pygmy marmoset (Callithrix pygmaea)ItalyITAEuropeCallithrix pygmaea

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Primates
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Sequence information

Genome sequences

  • @ref: 67770
  • description: Bifidobacterium parmae Uis4E
  • accession: GCA_002860365
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 361854

GC content

  • @ref: 67770
  • GC-content: 65.81

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno95.913no
gram-positiveyes93.096no
anaerobicyes98.278no
aerobicno96.842yes
halophileno82.73no
spore-formingno93.489no
thermophileno97.243yes
glucose-utilyes87.355no
motileno93.433no
glucose-fermentyes83.025no

External links

@ref: 63773

culture collection no.: CCUG 70964, LMG 30295, JCM 32706

straininfo link

  • @ref: 110332
  • straininfo: 410384

literature

  • topic: Phylogeny
  • Pubmed-ID: 29395537
  • title: Phylogenetic classification of six novel species belonging to the genus Bifidobacterium comprising Bifidobacterium anseris sp. nov., Bifidobacterium criceti sp. nov., Bifidobacterium imperatoris sp. nov., Bifidobacterium italicum sp. nov., Bifidobacterium margollesii sp. nov. and Bifidobacterium parmae sp. nov.
  • authors: Lugli GA, Mangifesta M, Duranti S, Anzalone R, Milani C, Mancabelli L, Alessandri G, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2018.01.002
  • year: 2018
  • mesh: Animals, Bacterial Typing Techniques, Base Sequence, Bifidobacterium/*classification/genetics, Callithrix/microbiology, Cricetinae/microbiology, DNA, Bacterial/genetics, Fatty Acids/analysis, Feces/*microbiology, Geese/microbiology, High-Throughput Nucleotide Sequencing, Italy, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rabbits/microbiology, Saguinus/microbiology, Sequence Analysis, DNA
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
63773Curators of the CCUGhttps://www.ccug.se/strain?id=70964Culture Collection University of Gothenburg (CCUG) (CCUG 70964)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
110332Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID410384.1