Strain identifier
BacDive ID: 157233
Type strain:
Species: Bifidobacterium parmae
Strain history: LMG 30295 <-- M. Ventura; Dept. of Chem., Univ. of Parma, Italy; Uis4E.
NCBI tax ID(s): 361854 (species)
version 8.1 (current version)
General
@ref: 63773
BacDive-ID: 157233
keywords: genome sequence, Bacteria, anaerobe, mesophilic
description: Bifidobacterium parmae CCUG 70964 is an anaerobe, mesophilic bacterium that was isolated from Faeces,Callithrix pygmaea.
NCBI tax id
- NCBI tax id: 361854
- Matching level: species
strain history
- @ref: 67770
- history: LMG 30295 <-- M. Ventura; Dept. of Chem., Univ. of Parma, Italy; Uis4E.
doi: 10.13145/bacdive157233.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Bifidobacteriales
- family: Bifidobacteriaceae
- genus: Bifidobacterium
- species: Bifidobacterium parmae
- full scientific name: Bifidobacterium parmae Lugli et al. 2018
@ref: 63773
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Bifidobacteriales
family: Bifidobacteriaceae
genus: Bifidobacterium
species: Bifidobacterium parmae
type strain: yes
Morphology
colony morphology
- @ref: 63773
- incubation period: 2 days
Culture and growth conditions
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
63773 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 63773
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
@ref | sample type | sampling date | geographic location | country | origin.country | continent | host species |
---|---|---|---|---|---|---|---|
63773 | Faeces,Callithrix pygmaea | 2014-09-14 | Emilia Romagna,Parma | Italy | ITA | Europe | |
67770 | Stool sample of a pygmy marmoset (Callithrix pygmaea) | Italy | ITA | Europe | Callithrix pygmaea |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Mammals | #Primates |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Sequence information
Genome sequences
- @ref: 67770
- description: Bifidobacterium parmae Uis4E
- accession: GCA_002860365
- assembly level: contig
- database: ncbi
- NCBI tax ID: 361854
GC content
- @ref: 67770
- GC-content: 65.81
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 95.913 | no |
gram-positive | yes | 93.096 | no |
anaerobic | yes | 98.278 | no |
aerobic | no | 96.842 | yes |
halophile | no | 82.73 | no |
spore-forming | no | 93.489 | no |
thermophile | no | 97.243 | yes |
glucose-util | yes | 87.355 | no |
motile | no | 93.433 | no |
glucose-ferment | yes | 83.025 | no |
External links
@ref: 63773
culture collection no.: CCUG 70964, LMG 30295, JCM 32706
straininfo link
- @ref: 110332
- straininfo: 410384
literature
- topic: Phylogeny
- Pubmed-ID: 29395537
- title: Phylogenetic classification of six novel species belonging to the genus Bifidobacterium comprising Bifidobacterium anseris sp. nov., Bifidobacterium criceti sp. nov., Bifidobacterium imperatoris sp. nov., Bifidobacterium italicum sp. nov., Bifidobacterium margollesii sp. nov. and Bifidobacterium parmae sp. nov.
- authors: Lugli GA, Mangifesta M, Duranti S, Anzalone R, Milani C, Mancabelli L, Alessandri G, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2018.01.002
- year: 2018
- mesh: Animals, Bacterial Typing Techniques, Base Sequence, Bifidobacterium/*classification/genetics, Callithrix/microbiology, Cricetinae/microbiology, DNA, Bacterial/genetics, Fatty Acids/analysis, Feces/*microbiology, Geese/microbiology, High-Throughput Nucleotide Sequencing, Italy, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rabbits/microbiology, Saguinus/microbiology, Sequence Analysis, DNA
- topic2: Transcriptome
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
63773 | Curators of the CCUG | https://www.ccug.se/strain?id=70964 | Culture Collection University of Gothenburg (CCUG) (CCUG 70964) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
110332 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID410384.1 |