Strain identifier
BacDive ID: 157231
Type strain: 
Species: Bifidobacterium criceti
Strain history: LMG 30188 <-- M. Ventura; Dept. of Chem., Univ. of Parma, Italy; Ham19E.
NCBI tax ID(s): 1960969 (species)
version 8.1 (current version)
General
@ref: 63771
BacDive-ID: 157231
keywords: genome sequence, Bacteria, anaerobe, mesophilic
description: Bifidobacterium criceti LMG 30188 is an anaerobe, mesophilic bacterium that was isolated from Faeces,Cricetus cricetus.
NCBI tax id
- NCBI tax id: 1960969
- Matching level: species
strain history
- @ref: 67770
- history: LMG 30188 <-- M. Ventura; Dept. of Chem., Univ. of Parma, Italy; Ham19E.
doi: 10.13145/bacdive157231.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Bifidobacteriales
- family: Bifidobacteriaceae
- genus: Bifidobacterium
- species: Bifidobacterium criceti
- full scientific name: Bifidobacterium criceti Lugli et al. 2018
@ref: 63771
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Bifidobacteriales
family: Bifidobacteriaceae
genus: Bifidobacterium
species: Bifidobacterium criceti
type strain: yes
Morphology
colony morphology
- @ref: 63771
- incubation period: 2 days
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 63771 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 63771
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | sampling date | geographic location | country | origin.country | continent | host species |
|---|---|---|---|---|---|---|---|
| 63771 | Faeces,Cricetus cricetus | 2013-05-03 | Emilia Romagna,Parma | Italy | ITA | Europe | |
| 67770 | Stool sample of a European hamster (Cricetus cricetus) | Italy | ITA | Europe | Cricetus cricetus |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Rodentia (Other) |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Sequence information
Genome sequences
- @ref: 67770
- description: Bifidobacterium criceti Ham19E
- accession: GCA_002286935
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1960969
GC content
- @ref: 67770
- GC-content: 62.53
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 96.511 | no |
| gram-positive | yes | 92.171 | no |
| anaerobic | yes | 97.376 | yes |
| aerobic | no | 97.035 | yes |
| halophile | no | 68.467 | no |
| spore-forming | no | 95.62 | no |
| glucose-util | yes | 86.977 | no |
| thermophile | no | 96.195 | yes |
| motile | no | 93.422 | no |
| glucose-ferment | yes | 81.288 | no |
External links
@ref: 63771
culture collection no.: LMG 30188, CCUG 70962, JCM 32704
straininfo link
- @ref: 110330
- straininfo: 409207
literature
- topic: Phylogeny
- Pubmed-ID: 29395537
- title: Phylogenetic classification of six novel species belonging to the genus Bifidobacterium comprising Bifidobacterium anseris sp. nov., Bifidobacterium criceti sp. nov., Bifidobacterium imperatoris sp. nov., Bifidobacterium italicum sp. nov., Bifidobacterium margollesii sp. nov. and Bifidobacterium parmae sp. nov.
- authors: Lugli GA, Mangifesta M, Duranti S, Anzalone R, Milani C, Mancabelli L, Alessandri G, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2018.01.002
- year: 2018
- mesh: Animals, Bacterial Typing Techniques, Base Sequence, Bifidobacterium/*classification/genetics, Callithrix/microbiology, Cricetinae/microbiology, DNA, Bacterial/genetics, Fatty Acids/analysis, Feces/*microbiology, Geese/microbiology, High-Throughput Nucleotide Sequencing, Italy, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rabbits/microbiology, Saguinus/microbiology, Sequence Analysis, DNA
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 63771 | Curators of the CCUG | https://www.ccug.se/strain?id=70962 | Culture Collection University of Gothenburg (CCUG) (CCUG 70962) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 110330 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID409207.1 |