Strain identifier
BacDive ID: 1572
Type strain: 
Species: Alteribacillus persepolensis
Strain Designation: HS136
Strain history: A. Ventosa HS136.
NCBI tax ID(s): 568899 (species)
version 8.1 (current version)
General
@ref: 15848
BacDive-ID: 1572
DSM-Number: 21632
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive, motile, rod-shaped
description: Alteribacillus persepolensis HS136 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from brine.
NCBI tax id
- NCBI tax id: 568899
- Matching level: species
strain history
| @ref | history |
|---|---|
| 15848 | <- C. Sánchez-Porro, Universidad de Alcalá de Henares, Madrid; HS136 <- R. Rohban and M. A. Amoozegar |
| 67770 | A. Ventosa HS136. |
doi: 10.13145/bacdive1572.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Alteribacillus
- species: Alteribacillus persepolensis
- full scientific name: Alteribacillus persepolensis (Amoozegar et al. 2009) Didari et al. 2012
synonyms
- @ref: 20215
- synonym: Bacillus persepolensis
@ref: 15848
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Alteribacillus
species: Alteribacillus persepolensis
full scientific name: Alteribacillus persepolensis (Amoozegar et al. 2009) Didari et al. 2012
strain designation: HS136
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 29278 | positive | 2.75 µm | 1.25 µm | rod-shaped | yes | |
| 69480 | yes | 92.671 | ||||
| 69480 | positive | 100 |
Culture and growth conditions
culture medium
- @ref: 15848
- name: MODIFIED BACTO MARINE BROTH (DSMZ Medium 514d)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514d
- composition: Name: MODIFIED BACTO MARINE BROTH (DSMZ Medium 514d) Composition: Difco marine broth 37.4 g/l Agar 15.0 g/l Malt extract 1.0 g/l Soy peptone 1.0 g/l Pancreatic digest of casein 1.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 29278 | positive | growth | 25-45 | |
| 29278 | positive | optimum | 40 | thermophilic |
| 67770 | positive | growth | 34 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 29278 | positive | growth | 7.0-10.0 | alkaliphile |
| 29278 | positive | optimum | 8.25 |
Physiology and metabolism
oxygen tolerance
- @ref: 29278
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 29278 | yes | |
| 69481 | yes | 100 |
| 69480 | yes | 100 |
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 29278 | NaCl | positive | growth | 05-20 % |
| 29278 | NaCl | positive | optimum | 10 % |
observation
- @ref: 67770
- observation: quinones: MK-7
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29278 | 22653 | asparagine | + | carbon source |
| 29278 | 28757 | fructose | + | carbon source |
| 29278 | 17306 | maltose | + | carbon source |
| 29278 | 17268 | myo-inositol | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29278 | catalase | + | 1.11.1.6 |
| 29278 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 15848 | brine | Howz Soltan Lake | Iran | IRN | Asia |
| 67770 | Water from the hypersaline lake Howz-Soltan in Iran |
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Environmental | #Aquatic |
| #Condition | #Saline |
Safety information
risk assessment
- @ref: 15848
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 15848
- description: Bacillus persepolensis partial 16S rRNA gene, type strain HS 136T
- accession: FM244839
- length: 1474
- database: ena
- NCBI tax ID: 568899
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Alteribacillus persepolensis strain DSM 21632 | 568899.4 | wgs | patric | 568899 |
| 66792 | Alteribacillus persepolensis DSM 21632 | 2654588171 | draft | img | 568899 |
| 67770 | Alteribacillus persepolensis DSM 21632 | GCA_900099605 | contig | ncbi | 568899 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 15848 | 37.1 | thermal denaturation, midpoint method (Tm) |
| 29278 | 37.1 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| gram-positive | yes | 90.831 | yes |
| anaerobic | no | 97.495 | yes |
| halophile | yes | 91.602 | yes |
| spore-forming | yes | 93.896 | yes |
| glucose-util | yes | 85.295 | no |
| thermophile | no | 92.097 | no |
| flagellated | yes | 70.121 | no |
| motile | yes | 87.917 | yes |
| aerobic | yes | 92.742 | no |
| glucose-ferment | no | 90.72 | no |
External links
@ref: 15848
culture collection no.: DSM 21632, CCM 7595, JCM 15720, LMG 25222
straininfo link
- @ref: 71217
- straininfo: 359343
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19620367 | Bacillus persepolensis sp. nov., a moderately halophilic bacterium from a hypersaline lake. | Amoozegar MA, Sanchez-Porro C, Rohban R, Hajighasemi M, Ventosa A | Int J Syst Evol Microbiol | 10.1099/ijs.0.010090-0 | 2009 | Aerobiosis, Bacillus/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Iran, Locomotion, Molecular Sequence Data, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Spores, Bacterial/cytology, Temperature, *Water Microbiology | Genetics |
| Phylogeny | 21571930 | Bacillus iranensis sp. nov., a moderate halophile from a hypersaline lake. | Bagheri M, Didari M, Amoozegar MA, Schumann P, Sanchez-Porro C, Mehrshad M, Ventosa A | Int J Syst Evol Microbiol | 10.1099/ijs.0.030874-0 | 2011 | Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/microbiology, Iran, Lakes/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Sodium Chloride, Spores, Bacterial/genetics, Vitamin K 2/chemistry, *Water Microbiology | Genetics |
| Phylogeny | 22228653 | Alteribacillus bidgolensis gen. nov., sp. nov., a moderately halophilic bacterium from a hypersaline lake, and reclassification of Bacillus persepolensis as Alteribacillus persepolensis comb. nov. | Didari M, Amoozegar MA, Bagheri M, Schumann P, Sproer C, Sanchez-Porro C, Ventosa A | Int J Syst Evol Microbiol | 10.1099/ijs.0.034173-0 | 2012 | Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Iran, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, *Water Microbiology | Genetics |
| Phylogeny | 27530438 | Description of Alteribacillus alkaliphilus sp. nov., reassignment of Bacillus iranensis (Bagheri et al. 2012) as Alteribacillus iranensis comb. nov. and emended description of the genus Alteribacillus. | Azmatunnisa Begum M, Varshini V, Rahul K, Chandana A, Sasikala C, Ramana CV | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001428 | 2016 | Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, India, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 29134392 | Aidingibacillus halophilus gen. nov., sp. nov., a novel member of the family Bacillaceae. | Wang Y, Chunyu WX, Jiang GQ, Huang L, Zhang B, Ji Y, Ding ZG, Yin M, Tang SK | Antonie Van Leeuwenhoek | 10.1007/s10482-017-0980-x | 2017 | Bacillaceae/chemistry/*classification/genetics, Base Composition, Cell Wall/chemistry, China, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Glycolipids/analysis, Hydrogen-Ion Concentration, Lakes/microbiology, Peptidoglycan/analysis, Phosphatidylcholines, Phosphatidylglycerols, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Vitamin K 2/analogs & derivatives/analysis, *Water Microbiology |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
|---|---|---|---|---|---|---|---|
| 15848 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21632) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21632 | ||||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
| 29278 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25694 | 28776041 | ||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | ||||
| 71217 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID359343.1 | StrainInfo: A central database for resolving microbial strain identifiers |