Strain identifier
version 9.3 (current version)
General
@ref: 63580
BacDive-ID: 157078
keywords: genome sequence, Bacteria, microaerophile, mesophilic
description: Streptococcus pneumoniae CCUG 69382 is a microaerophile, mesophilic bacterium that was isolated from Human,blood.
NCBI tax id
- NCBI tax id: 1313
- Matching level: species
doi: 10.13145/bacdive157078.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Streptococcaceae
- genus: Streptococcus
- species: Streptococcus pneumoniae
- full scientific name: Streptococcus pneumoniae (Klein 1884) Chester 1901 (Approved Lists 1980)
synonyms
@ref synonym 20215 Micrococcus pneumoniae 20215 Staphylococcus pneumoniae
@ref: 63580
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Streptococcaceae
genus: Streptococcus
species: Streptococcus pneumoniae
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 125438 | no | 90 | |
| 125438 | 90.591 | positive |
Culture and growth conditions
culture temp
- @ref: 63580
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 63580 | microaerophile | |
| 125439 | microaerophile | 99 |
spore formation
- @ref: 125439
- spore formation: no
- confidence: 91.7
Isolation, sampling and environmental information
isolation
- @ref: 63580
- sample type: Human,blood
- sampling date: 1991
- geographic location: Tennessee
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Fluids | #Blood |
| #Infection | #Patient |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptococcus pneumoniae CCUG 69382 | GCA_002014115 | scaffold | ncbi | 1313 |
| 66792 | Streptococcus pneumoniae strain CCUG 69382 | 1313.13973 | wgs | patric | 1313 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 90.591 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 89.866 | yes |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 97.755 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 83.883 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 95 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 90 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 91.7 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 86.4 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 89 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | microaerophile | 99 |
External links
@ref: 63580
culture collection no.: CCUG 69382, ATCC 51916
straininfo link
- @ref: 110207
- straininfo: 43245
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Pathogenicity | 16174686 | Evaluation of ceftriaxone, vancomycin and rifampicin alone and combined in an experimental model of meningitis caused by highly cephalosporin-resistant Streptococcus pneumoniae ATCC 51916. | Ribes S, Taberner F, Domenech A, Cabellos C, Tubau F, Linares J, Fernandez Viladrich P, Gudiol F | J Antimicrob Chemother | 10.1093/jac/dki323 | 2005 | Animals, Ceftriaxone/administration & dosage/pharmacology/*therapeutic use, *Cephalosporin Resistance, Cerebrospinal Fluid/microbiology, Colony Count, Microbial, Disease Models, Animal, Drug Combinations, Drug Interactions, Drug Resistance, Bacterial, Female, Meningitis, Pneumococcal/*drug therapy/microbiology, Microbial Sensitivity Tests, Rabbits, Rifampin/administration & dosage/pharmacology/*therapeutic use, Streptococcus pneumoniae/*drug effects, Vancomycin/administration & dosage/pharmacology/*therapeutic use | |
| Enzymology | 16507562 | Evaluation of fosfomycin alone and in combination with ceftriaxone or vancomycin in an experimental model of meningitis caused by two strains of cephalosporin-resistant Streptococcus pneumoniae. | Ribes S, Taberner F, Domenech A, Cabellos C, Tubau F, Linares J, Viladrich PF, Gudiol F | J Antimicrob Chemother | 10.1093/jac/dkl047 | 2006 | Animals, *Anti-Bacterial Agents/pharmacokinetics/pharmacology/therapeutic use, Ceftriaxone/pharmacokinetics/pharmacology/therapeutic use, Cephalosporin Resistance/*drug effects, Disease Models, Animal, Drug Synergism, Drug Therapy, Combination, Female, Fosfomycin/pharmacokinetics/pharmacology/therapeutic use, Meningitis, Pneumococcal/blood/*drug therapy, Microbial Sensitivity Tests, Rabbits, Streptococcus pneumoniae/*drug effects, Vancomycin/pharmacokinetics/pharmacology/therapeutic use | Pathogenicity |
| Pathogenicity | 24962033 | Experimental study of the efficacy of daptomycin for the treatment of cephalosporin-resistant pneumococcal meningitis. | Vivas M, Force E, Garrigos C, Tubau F, Platteel AC, Ariza J, Cabellos C | J Antimicrob Chemother | 10.1093/jac/dku231 | 2014 | Animals, Cephalosporin Resistance/*drug effects, Cephalosporins/pharmacology/*therapeutic use, Daptomycin/pharmacology/*therapeutic use, Female, Meningitis, Pneumococcal/cerebrospinal fluid/*drug therapy, Rabbits, Treatment Outcome | |
| Enzymology | 25813395 | Effect of dexamethasone on the efficacy of daptomycin in the therapy of experimental pneumococcal meningitis. | Vivas M, Force E, Tubau F, El Haj C, Ariza J, Cabellos C | Int J Antimicrob Agents | 10.1016/j.ijantimicag.2015.01.014 | 2015 | Animals, Anti-Bacterial Agents/pharmacokinetics/pharmacology/*therapeutic use, Bacterial Load, Cerebrospinal Fluid/chemistry, Daptomycin/pharmacokinetics/pharmacology/*therapeutic use, Dexamethasone/pharmacology/*therapeutic use, Drug Resistance, Bacterial, Drug Therapy, Combination, Meningitis, Pneumococcal/*drug therapy, Microbial Sensitivity Tests, Rabbits, Streptococcus pneumoniae, Treatment Outcome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 63580 | Curators of the CCUG | https://www.ccug.se/strain?id=69382 | Culture Collection University of Gothenburg (CCUG) (CCUG 69382) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 110207 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID43245.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |