Strain identifier
version 8.1 (current version)
General
@ref: 63580
BacDive-ID: 157078
keywords: genome sequence, Bacteria, microaerophile, mesophilic
description: Streptococcus pneumoniae CCUG 69382 is a microaerophile, mesophilic bacterium that was isolated from Human,blood.
NCBI tax id
- NCBI tax id: 1313
- Matching level: species
doi: 10.13145/bacdive157078.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Streptococcaceae
- genus: Streptococcus
- species: Streptococcus pneumoniae
- full scientific name: Streptococcus pneumoniae (Klein 1884) Chester 1901 (Approved Lists 1980)
synonyms
@ref synonym 20215 Staphylococcus pneumoniae 20215 Micrococcus pneumoniae
@ref: 63580
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Streptococcaceae
genus: Streptococcus
species: Streptococcus pneumoniae
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 95.278 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture temp
- @ref: 63580
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 63580
- oxygen tolerance: microaerophile
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.965 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 63580
- sample type: Human,blood
- sampling date: 1991
- geographic location: Tennessee
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Fluids | #Blood |
| #Infection | #Patient |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptococcus pneumoniae CCUG 69382 | GCA_002014115 | scaffold | ncbi | 1313 |
| 66792 | Streptococcus pneumoniae strain CCUG 69382 | 1313.13973 | wgs | patric | 1313 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 96.748 | no |
| gram-positive | yes | 93.102 | no |
| anaerobic | no | 94.975 | no |
| aerobic | no | 95.929 | yes |
| halophile | yes | 76.502 | no |
| spore-forming | no | 91.345 | no |
| glucose-util | yes | 87.322 | no |
| thermophile | no | 99.025 | yes |
| motile | no | 94.676 | no |
| glucose-ferment | yes | 85.104 | no |
External links
@ref: 63580
culture collection no.: CCUG 69382, ATCC 51916
straininfo link
- @ref: 110207
- straininfo: 43245
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Pathogenicity | 16174686 | Evaluation of ceftriaxone, vancomycin and rifampicin alone and combined in an experimental model of meningitis caused by highly cephalosporin-resistant Streptococcus pneumoniae ATCC 51916. | Ribes S, Taberner F, Domenech A, Cabellos C, Tubau F, Linares J, Fernandez Viladrich P, Gudiol F | J Antimicrob Chemother | 10.1093/jac/dki323 | 2005 | Animals, Ceftriaxone/administration & dosage/pharmacology/*therapeutic use, *Cephalosporin Resistance, Cerebrospinal Fluid/microbiology, Colony Count, Microbial, Disease Models, Animal, Drug Combinations, Drug Interactions, Drug Resistance, Bacterial, Female, Meningitis, Pneumococcal/*drug therapy/microbiology, Microbial Sensitivity Tests, Rabbits, Rifampin/administration & dosage/pharmacology/*therapeutic use, Streptococcus pneumoniae/*drug effects, Vancomycin/administration & dosage/pharmacology/*therapeutic use | |
| Enzymology | 16507562 | Evaluation of fosfomycin alone and in combination with ceftriaxone or vancomycin in an experimental model of meningitis caused by two strains of cephalosporin-resistant Streptococcus pneumoniae. | Ribes S, Taberner F, Domenech A, Cabellos C, Tubau F, Linares J, Viladrich PF, Gudiol F | J Antimicrob Chemother | 10.1093/jac/dkl047 | 2006 | Animals, *Anti-Bacterial Agents/pharmacokinetics/pharmacology/therapeutic use, Ceftriaxone/pharmacokinetics/pharmacology/therapeutic use, Cephalosporin Resistance/*drug effects, Disease Models, Animal, Drug Synergism, Drug Therapy, Combination, Female, Fosfomycin/pharmacokinetics/pharmacology/therapeutic use, Meningitis, Pneumococcal/blood/*drug therapy, Microbial Sensitivity Tests, Rabbits, Streptococcus pneumoniae/*drug effects, Vancomycin/pharmacokinetics/pharmacology/therapeutic use | Pathogenicity |
| Pathogenicity | 24962033 | Experimental study of the efficacy of daptomycin for the treatment of cephalosporin-resistant pneumococcal meningitis. | Vivas M, Force E, Garrigos C, Tubau F, Platteel AC, Ariza J, Cabellos C | J Antimicrob Chemother | 10.1093/jac/dku231 | 2014 | Animals, Cephalosporin Resistance/*drug effects, Cephalosporins/pharmacology/*therapeutic use, Daptomycin/pharmacology/*therapeutic use, Female, Meningitis, Pneumococcal/cerebrospinal fluid/*drug therapy, Rabbits, Treatment Outcome | |
| Enzymology | 25813395 | Effect of dexamethasone on the efficacy of daptomycin in the therapy of experimental pneumococcal meningitis. | Vivas M, Force E, Tubau F, El Haj C, Ariza J, Cabellos C | Int J Antimicrob Agents | 10.1016/j.ijantimicag.2015.01.014 | 2015 | Animals, Anti-Bacterial Agents/pharmacokinetics/pharmacology/*therapeutic use, Bacterial Load, Cerebrospinal Fluid/chemistry, Daptomycin/pharmacokinetics/pharmacology/*therapeutic use, Dexamethasone/pharmacology/*therapeutic use, Drug Resistance, Bacterial, Drug Therapy, Combination, Meningitis, Pneumococcal/*drug therapy, Microbial Sensitivity Tests, Rabbits, Streptococcus pneumoniae, Treatment Outcome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 63580 | Curators of the CCUG | https://www.ccug.se/strain?id=69382 | Culture Collection University of Gothenburg (CCUG) (CCUG 69382) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 110207 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID43245.1 |