Strain identifier
version 8.1 (current version)
General
@ref: 63579
BacDive-ID: 157077
keywords: genome sequence, Bacteria, microaerophile, mesophilic
description: Streptococcus pneumoniae CCUG 69381 is a microaerophile, mesophilic bacterium that was isolated from Human,clinical sample.
NCBI tax id
- NCBI tax id: 1313
- Matching level: species
doi: 10.13145/bacdive157077.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Streptococcaceae
- genus: Streptococcus
- species: Streptococcus pneumoniae
- full scientific name: Streptococcus pneumoniae (Klein 1884) Chester 1901 (Approved Lists 1980)
synonyms
@ref synonym 20215 Staphylococcus pneumoniae 20215 Micrococcus pneumoniae
@ref: 63579
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Streptococcaceae
genus: Streptococcus
species: Streptococcus pneumoniae
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 94.162 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture temp
- @ref: 63579
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 63579
- oxygen tolerance: microaerophile
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.988 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 63579
- sample type: Human,clinical sample
- sampling date: 1993
- geographic location: Toulouse
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Infection | #Medical environment | #Clinic |
| #Infection | #Patient |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptococcus pneumoniae CCUG 69381 | GCA_002014075 | scaffold | ncbi | 1313 |
| 66792 | Streptococcus pneumoniae SP195 | 453363.4 | wgs | patric | 453363 |
| 66792 | Streptococcus pneumoniae strain CCUG 69381 | 1313.13971 | wgs | patric | 1313 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 95.373 | no |
| gram-positive | yes | 93.214 | no |
| anaerobic | no | 94.303 | yes |
| halophile | yes | 75.209 | no |
| spore-forming | no | 91.839 | no |
| glucose-util | yes | 86.37 | no |
| aerobic | no | 95.588 | yes |
| thermophile | no | 99.145 | yes |
| motile | no | 93.975 | no |
| glucose-ferment | yes | 85.838 | no |
External links
@ref: 63579
culture collection no.: CCUG 69381, ATCC 700671
straininfo link
- @ref: 110206
- straininfo: 44071
literature
- topic: Pathogenicity
- Pubmed-ID: 15000740
- title: Typing and molecular characterization of Streptococcus pneumoniae with reduced susceptibility to cefotaxime isolated in Latin America.
- authors: Castanheira M, Jones RN, Silbert S, Brandileone MC, Sader HS
- journal: Microb Drug Resist
- DOI: 10.1089/107662903322762770
- year: 2003
- mesh: Cefotaxime/*pharmacology, *Cephalosporin Resistance, Cephalosporins/*pharmacology, Electrophoresis, Gel, Pulsed-Field, Humans, Latin America, Microbial Sensitivity Tests, Penicillins/pharmacology, Ribotyping, Serotyping, Streptococcus pneumoniae/*drug effects/*genetics
- topic2: Enzymology
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 63579 | Curators of the CCUG | https://www.ccug.se/strain?id=69381 | Culture Collection University of Gothenburg (CCUG) (CCUG 69381) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 110206 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID44071.1 |