Strain identifier

BacDive ID: 157026

Type strain: No

Species: Klebsiella pneumoniae

NCBI tax ID(s): 573 (species)

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General

@ref: 63518

BacDive-ID: 157026

keywords: genome sequence, Bacteria, aerobe, mesophilic, Gram-negative

description: Klebsiella pneumoniae NCTC 13443 is an aerobe, mesophilic, Gram-negative bacterium of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 573
  • Matching level: species

doi: 10.13145/bacdive157026.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Klebsiella
  • species: Klebsiella pneumoniae
  • full scientific name: Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Hyalococcus pneumoniae

@ref: 63518

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Klebsiella

species: Klebsiella pneumoniae

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.961

Culture and growth conditions

culture temp

  • @ref: 63518
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 63518
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69480no99.85
69481no98

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837418257ornithine-degradation
6837429016arginine-hydrolysis
6837425094lysine+degradation
6837416199urea+hydrolysis
6837418403L-arabitol-builds acid from
6837418024D-galacturonic acid+builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837416899D-mannitol+builds acid from
6837417306maltose+builds acid from
6837415963ribitol+builds acid from
6837418394palatinose+builds acid from
6837415792malonate+assimilation
6837427897tryptophan-energy source
6837417634D-glucose+builds acid from
6837417992sucrose+builds acid from
6837430849L-arabinose+builds acid from
6837418333D-arabitol+builds acid from
6837427082trehalose+builds acid from
6837462345L-rhamnose+builds acid from
6837417268myo-inositol+builds acid from
6837417057cellobiose+builds acid from
6837430911sorbitol+builds acid from

metabolite production

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68374L-aspartate arylamidase+3.4.11.21
68374alpha-maltosidase-
68374alpha-galactosidase+3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase+3.2.1.23
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase+3.2.1.21
68374lipase-
68374urease+3.5.1.5
68374lysine decarboxylase+4.1.1.18
68374arginine dihydrolase-3.5.3.6
68374ornithine decarboxylase-4.1.1.17

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
63518--++-+---+++++-+--+++++-++++++-+

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Klebsiella pneumoniae NCTC13443GCA_900451585contigncbi573
66792Klebsiella pneumoniae strain NCTC13443573.20120wgspatric573

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno98no
gram-positiveno97.033no
anaerobicno95.968no
halophileno90.266no
spore-formingno92.548no
glucose-utilyes94.79no
thermophileno99.805yes
flagellatedno93.646no
aerobicyes90.987yes
motileno82.516no
glucose-fermentyes90.402no

External links

@ref: 63518

culture collection no.: NCTC 13443, CCUG 68728

straininfo link

  • @ref: 110167
  • straininfo: 411410

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Pathogenicity21497063Real-time PCR assay allows detection of the New Delhi metallo-beta-lactamase (NDM-1)-encoding gene in France.Diene SM, Bruder N, Raoult D, Rolain JMInt J Antimicrob Agents10.1016/j.ijantimicag.2011.02.0062011Bacteriological Techniques/*methods, France, Humans, Klebsiella Infections/microbiology, Klebsiella pneumoniae/*genetics/isolation & purification, Polymerase Chain Reaction/*methods, Sensitivity and Specificity, beta-Lactamases/*geneticsEnzymology
Pathogenicity26846875Simple and rapid sample preparation system for the molecular detection of antibiotic resistant pathogens in human urine.Valiadi M, Kalsi S, Jones IG, Turner C, Sutton JM, Morgan HBiomed Microdevices10.1007/s10544-016-0031-92016Bacterial Proteins/*genetics, Drug Resistance, Bacterial/*genetics, Female, Humans, *Klebsiella Infections/genetics/urine, Klebsiella pneumoniae/*genetics, Male, Polymerase Chain Reaction/*methods, *Urinary Tract Infections/genetics/urine, beta-Lactamases/*genetics
Pathogenicity34544274Synergism versus Additivity: Defining the Interactions between Common Disinfectants.Noel DJ, Keevil CW, Wilks SAmBio10.1128/mBio.02281-212021Acinetobacter baumannii/drug effects/growth & development, Benzalkonium Compounds/*pharmacology, Biguanides/*pharmacology, Cresols/*pharmacology, Disinfectants/*pharmacology, Drug Synergism, Enterococcus faecalis/drug effects/growth & development, Klebsiella pneumoniae/drug effects/growth & development, Microbial Sensitivity Tests, Propylene Glycols/*pharmacology, Quaternary Ammonium Compounds/*pharmacokinetics/pharmacology, Staphylococcus aureus/drug effects/growth & developmentEnzymology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
63518Curators of the CCUGhttps://www.ccug.se/strain?id=68728Culture Collection University of Gothenburg (CCUG) (CCUG 68728)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68374Automatically annotated from API ID32E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
110167Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID411410.1