Strain identifier
version 8.1 (current version)
General
@ref: 63468
BacDive-ID: 156994
keywords: Bacteria, anaerobe, mesophilic
description: Odoribacter splanchnicus CCUG 68330 is an anaerobe, mesophilic bacterium that was isolated from Human blood,72-yr-old female.
NCBI tax id
- NCBI tax id: 28118
- Matching level: species
doi: 10.13145/bacdive156994.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Odoribacteraceae
- genus: Odoribacter
- species: Odoribacter splanchnicus
- full scientific name: Odoribacter splanchnicus (Werner et al. 1975) Hardham et al. 2008
synonyms
- @ref: 20215
- synonym: Bacteroides splanchnicus
@ref: 63468
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Marinifilaceae
genus: Odoribacter
species: Odoribacter splanchnicus
type strain: no
Culture and growth conditions
culture temp
- @ref: 63468
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 63468
- oxygen tolerance: anaerobe
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68380 | 16199 | urea | - | hydrolysis |
| 68380 | 29016 | arginine | - | hydrolysis |
| 68380 | 16024 | D-mannose | - | fermentation |
| 68380 | 16634 | raffinose | - | fermentation |
| 68380 | 29985 | L-glutamate | - | degradation |
| 68380 | 17632 | nitrate | - | reduction |
| 68380 | 27897 | tryptophan | + | energy source |
metabolite production
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- production: yes
metabolite tests
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68380 | serine arylamidase | - | |
| 68380 | glutamyl-glutamate arylamidase | + | |
| 68380 | histidine arylamidase | + | |
| 68380 | glycin arylamidase | - | |
| 68380 | alanine arylamidase | + | 3.4.11.2 |
| 68380 | tyrosine arylamidase | + | |
| 68380 | pyrrolidonyl arylamidase | + | 3.4.19.3 |
| 68380 | leucine arylamidase | + | 3.4.11.1 |
| 68380 | phenylalanine arylamidase | + | |
| 68380 | leucyl glycin arylamidase | + | 3.4.11.1 |
| 68380 | proline-arylamidase | - | 3.4.11.5 |
| 68380 | L-arginine arylamidase | + | |
| 68380 | alkaline phosphatase | + | 3.1.3.1 |
| 68380 | tryptophan deaminase | + | 4.1.99.1 |
| 68380 | alpha-fucosidase | + | 3.2.1.51 |
| 68380 | glutamate decarboxylase | - | 4.1.1.15 |
| 68380 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
| 68380 | beta-glucuronidase | - | 3.2.1.31 |
| 68380 | alpha-arabinosidase | - | 3.2.1.55 |
| 68380 | beta-glucosidase | - | 3.2.1.21 |
| 68380 | alpha-glucosidase | - | 3.2.1.20 |
| 68380 | beta-Galactosidase 6-phosphate | - | |
| 68380 | beta-galactosidase | + | 3.2.1.23 |
| 68380 | alpha-galactosidase | + | 3.2.1.22 |
| 68380 | arginine dihydrolase | - | 3.5.3.6 |
| 68380 | urease | - | 3.5.1.5 |
API rID32A
| @ref | URE | ADH Arg | alpha GAL | beta GAL | beta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta NAG | MNE | RAF | GDC | alpha FUC | NIT | IND | PAL | ArgA | ProA | LGA | PheA | LeuA | PyrA | TyrA | AlaA | GlyA | HisA | GGA | SerA |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63468 | - | - | + | + | - | - | - | - | - | + | - | - | - | + | - | + | + | + | - | + | + | + | + | + | + | - | + | + | - |
Isolation, sampling and environmental information
isolation
- @ref: 63468
- sample type: Human blood,72-yr-old female
- sampling date: 2015-12-21
- geographic location: Göteborg
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | #Female |
| #Host Body Product | #Fluids | #Blood |
| #Infection | #Patient |
External links
@ref: 63468
culture collection no.: CCUG 68330
straininfo link
- @ref: 110140
- straininfo: 410981
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 63468 | Curators of the CCUG | https://www.ccug.se/strain?id=68330 | Culture Collection University of Gothenburg (CCUG) (CCUG 68330) | |
| 68380 | Automatically annotated from API rID32A | |||
| 110140 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID410981.1 |