Strain identifier

BacDive ID: 156904

Type strain: No

Species: Haemophilus haemolyticus

NCBI tax ID(s): 726 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 8.1 (current version)

General

@ref: 63352

BacDive-ID: 156904

keywords: genome sequence, Bacteria, microaerophile, mesophilic

description: Haemophilus haemolyticus CCUG 66565 is a microaerophile, mesophilic bacterium that was isolated from Human sputum,22-yr-old Male.

NCBI tax id

  • NCBI tax id: 726
  • Matching level: species

doi: 10.13145/bacdive156904.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Haemophilus
  • species: Haemophilus haemolyticus
  • full scientific name: Haemophilus haemolyticus Bergey et al. 1923 (Approved Lists 1980)

@ref: 63352

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Haemophilus

species: Haemophilus haemolyticus

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no90.154
6948099.992negative

Culture and growth conditions

culture temp

  • @ref: 63352
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 63352
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69480no99.989
69481no100

Isolation, sampling and environmental information

isolation

  • @ref: 63352
  • sample type: Human sputum,22-yr-old Male
  • sampling date: 2014-11-03
  • geographic location: Göteborg
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Male
#Host Body Product#Fluids#Sputum
#Infection#Patient

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Haemophilus sp. CCUG 66565GCA_001679495contigncbi1859694
66792Haemophilus sp. CCUG 665651859694.4wgspatric1859694
66792Haemophilus sp. CCUG 665652924798928draftimg1859694

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno89.663no
gram-positiveno98.465no
anaerobicno93.06yes
aerobicno97.499yes
halophileyes52.881no
spore-formingno98.682no
glucose-utilno59.153no
flagellatedno94.225no
thermophileno98.557yes
glucose-fermentyes53.235no

External links

@ref: 63352

culture collection no.: CCUG 66565

straininfo link

  • @ref: 110064
  • straininfo: 409772

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
63352Curators of the CCUGhttps://www.ccug.se/strain?id=66565Culture Collection University of Gothenburg (CCUG) (CCUG 66565)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
110064Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID409772.1