Strain identifier
version 8.1 (current version)
General
@ref: 63352
BacDive-ID: 156904
keywords: genome sequence, Bacteria, microaerophile, mesophilic
description: Haemophilus haemolyticus CCUG 66565 is a microaerophile, mesophilic bacterium that was isolated from Human sputum,22-yr-old Male.
NCBI tax id
- NCBI tax id: 726
- Matching level: species
doi: 10.13145/bacdive156904.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pasteurellales
- family: Pasteurellaceae
- genus: Haemophilus
- species: Haemophilus haemolyticus
- full scientific name: Haemophilus haemolyticus Bergey et al. 1923 (Approved Lists 1980)
@ref: 63352
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pasteurellales
family: Pasteurellaceae
genus: Haemophilus
species: Haemophilus haemolyticus
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 90.154 | |
69480 | 99.992 | negative |
Culture and growth conditions
culture temp
- @ref: 63352
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 63352
- oxygen tolerance: microaerophile
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | no | 99.989 |
69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 63352
- sample type: Human sputum,22-yr-old Male
- sampling date: 2014-11-03
- geographic location: Göteborg
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | #Male |
#Host Body Product | #Fluids | #Sputum |
#Infection | #Patient |
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Haemophilus sp. CCUG 66565 | GCA_001679495 | contig | ncbi | 1859694 |
66792 | Haemophilus sp. CCUG 66565 | 1859694.4 | wgs | patric | 1859694 |
66792 | Haemophilus sp. CCUG 66565 | 2924798928 | draft | img | 1859694 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 89.663 | no |
gram-positive | no | 98.465 | no |
anaerobic | no | 93.06 | yes |
aerobic | no | 97.499 | yes |
halophile | yes | 52.881 | no |
spore-forming | no | 98.682 | no |
glucose-util | no | 59.153 | no |
flagellated | no | 94.225 | no |
thermophile | no | 98.557 | yes |
glucose-ferment | yes | 53.235 | no |
External links
@ref: 63352
culture collection no.: CCUG 66565
straininfo link
- @ref: 110064
- straininfo: 409772
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
63352 | Curators of the CCUG | https://www.ccug.se/strain?id=66565 | Culture Collection University of Gothenburg (CCUG) (CCUG 66565) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
110064 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID409772.1 |