Strain identifier

BacDive ID: 156903

Type strain: Yes

Species: Mycobacterium saopaulense

Strain history: LMG 28586 <-- S. C. Leão; Univ. Fed. de São Paulo, Brazil; EPM 10906.

NCBI tax ID(s): 1578165 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 63351

BacDive-ID: 156903

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic

description: Mycobacterium saopaulense CCUG 66554 is a microaerophile, mesophilic bacterium that was isolated from Human eye,corneal scraping.

NCBI tax id

  • NCBI tax id: 1578165
  • Matching level: species

strain history

  • @ref: 67770
  • history: LMG 28586 <-- S. C. Leão; Univ. Fed. de São Paulo, Brazil; EPM 10906.

doi: 10.13145/bacdive156903.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium saopaulense
  • full scientific name: Mycobacterium saopaulense Nogueira et al. 2015
  • synonyms

    • @ref: 20215
    • synonym: Mycobacteroides saopaulense

@ref: 63351

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium saopaulense

type strain: yes

Morphology

colony morphology

  • @ref: 63351
  • incubation period: 2 days

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
63351positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 63351
  • oxygen tolerance: microaerophile

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinent
63351Human eye,corneal scraping2000-09-11Sao PauloBrazilBRAMiddle and South America
67770Corneal of a patient with infectious crystalline keratopathySão PauloBrazilBRAMiddle and South America

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Organ#Eye
#Infection#Patient

taxonmaps

  • @ref: 69479
  • File name: preview.99_54.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_44;97_46;98_50;99_54&stattab=map
  • Last taxonomy: Mycobacteroides
  • 16S sequence: KM973037
  • Sequence Identity:
  • Total samples: 21994
  • soil counts: 7046
  • aquatic counts: 6199
  • animal counts: 7007
  • plant counts: 1742

Sequence information

16S sequences

  • @ref: 67770
  • description: Mycobacterium saopaulense strain EPM10906 16S ribosomal RNA gene, partial sequence
  • accession: KM973037
  • length: 1384
  • database: ena
  • NCBI tax ID: 1578165

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycobacterium saopaulense strain CCUG 665541578165.5wgspatric1578165
67770Mycobacteroides saopaulense EPM10906GCA_001456355completencbi1578165
67770Mycobacteroides saopaulense CCUG 66554GCA_002086715contigncbi1578165

GC content

  • @ref: 67770
  • GC-content: 64.6
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno95.685no
gram-positiveyes91.488no
anaerobicno99.374yes
aerobicyes91.064no
halophileno94.268no
spore-formingno82.36no
glucose-utilyes82.524no
flagellatedno98.621no
thermophileno99.574no
glucose-fermentno94.278no

External links

@ref: 63351

culture collection no.: CCUG 66554, LMG 28586, JCM 32436, INCQS 0733

straininfo link

  • @ref: 110063
  • straininfo: 396484

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
63351Curators of the CCUGhttps://www.ccug.se/strain?id=66554Culture Collection University of Gothenburg (CCUG) (CCUG 66554)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
110063Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396484.1