Strain identifier
BacDive ID: 156903
Type strain:
Species: Mycobacterium saopaulense
Strain history: LMG 28586 <-- S. C. Leão; Univ. Fed. de São Paulo, Brazil; EPM 10906.
NCBI tax ID(s): 1578165 (species)
General
@ref: 63351
BacDive-ID: 156903
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic
description: Mycobacterium saopaulense CCUG 66554 is a microaerophile, mesophilic bacterium that was isolated from Human eye,corneal scraping.
NCBI tax id
- NCBI tax id: 1578165
- Matching level: species
strain history
- @ref: 67770
- history: LMG 28586 <-- S. C. Leão; Univ. Fed. de São Paulo, Brazil; EPM 10906.
doi: 10.13145/bacdive156903.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium saopaulense
- full scientific name: Mycobacterium saopaulense Nogueira et al. 2015
synonyms
- @ref: 20215
- synonym: Mycobacteroides saopaulense
@ref: 63351
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium saopaulense
type strain: yes
Morphology
colony morphology
- @ref: 63351
- incubation period: 2 days
Culture and growth conditions
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
63351 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 63351
- oxygen tolerance: microaerophile
Isolation, sampling and environmental information
isolation
@ref | sample type | sampling date | geographic location | country | origin.country | continent |
---|---|---|---|---|---|---|
63351 | Human eye,corneal scraping | 2000-09-11 | Sao Paulo | Brazil | BRA | Middle and South America |
67770 | Corneal of a patient with infectious crystalline keratopathy | São Paulo | Brazil | BRA | Middle and South America |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body-Site | #Organ | #Eye |
#Infection | #Patient |
taxonmaps
- @ref: 69479
- File name: preview.99_54.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_44;97_46;98_50;99_54&stattab=map
- Last taxonomy: Mycobacteroides
- 16S sequence: KM973037
- Sequence Identity:
- Total samples: 21994
- soil counts: 7046
- aquatic counts: 6199
- animal counts: 7007
- plant counts: 1742
Sequence information
16S sequences
- @ref: 67770
- description: Mycobacterium saopaulense strain EPM10906 16S ribosomal RNA gene, partial sequence
- accession: KM973037
- length: 1384
- database: ena
- NCBI tax ID: 1578165
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Mycobacterium saopaulense strain CCUG 66554 | 1578165.5 | wgs | patric | 1578165 |
67770 | Mycobacteroides saopaulense EPM10906 | GCA_001456355 | complete | ncbi | 1578165 |
67770 | Mycobacteroides saopaulense CCUG 66554 | GCA_002086715 | contig | ncbi | 1578165 |
GC content
- @ref: 67770
- GC-content: 64.6
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 95.685 | no |
gram-positive | yes | 91.488 | no |
anaerobic | no | 99.374 | yes |
aerobic | yes | 91.064 | no |
halophile | no | 94.268 | no |
spore-forming | no | 82.36 | no |
glucose-util | yes | 82.524 | no |
flagellated | no | 98.621 | no |
thermophile | no | 99.574 | no |
glucose-ferment | no | 94.278 | no |
External links
@ref: 63351
culture collection no.: CCUG 66554, LMG 28586, JCM 32436, INCQS 0733
straininfo link
- @ref: 110063
- straininfo: 396484
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
63351 | Curators of the CCUG | https://www.ccug.se/strain?id=66554 | Culture Collection University of Gothenburg (CCUG) (CCUG 66554) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
110063 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396484.1 |