Strain identifier
BacDive ID: 156676
Type strain: 
Species: Streptococcus pseudopneumoniae
NCBI tax ID(s): 257758 (species)
version 8.1 (current version)
General
@ref: 63071
BacDive-ID: 156676
keywords: genome sequence, Bacteria, microaerophile, mesophilic
description: Streptococcus pseudopneumoniae CCUG 64062 is a microaerophile, mesophilic bacterium that was isolated from Human sputum,80-yr-old man.
NCBI tax id
- NCBI tax id: 257758
- Matching level: species
doi: 10.13145/bacdive156676.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Streptococcaceae
- genus: Streptococcus
- species: Streptococcus pseudopneumoniae
- full scientific name: Streptococcus pseudopneumoniae Arbique et al. 2005
@ref: 63071
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Streptococcaceae
genus: Streptococcus
species: Streptococcus pseudopneumoniae
type strain: no
Culture and growth conditions
culture temp
- @ref: 63071
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 63071
- oxygen tolerance: microaerophile
Isolation, sampling and environmental information
isolation
- @ref: 63071
- sample type: Human sputum,80-yr-old man
- sampling date: 2013-03-01
- geographic location: Kalmar
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | #Male |
| #Host Body Product | #Fluids | #Sputum |
| #Infection | #Patient |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptococcus pseudopneumoniae CCUG 64062 | GCA_011714855 | scaffold | ncbi | 257758 |
| 66792 | Streptococcus pseudopneumoniae strain CCUG 64062 | 257758.664 | wgs | patric | 257758 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 95.859 | no |
| gram-positive | yes | 94.442 | no |
| anaerobic | no | 93.08 | yes |
| aerobic | no | 96.52 | yes |
| halophile | yes | 69.856 | no |
| spore-forming | no | 91.54 | no |
| glucose-util | yes | 86.54 | no |
| thermophile | no | 99.202 | yes |
| motile | no | 94.642 | no |
| glucose-ferment | yes | 88.019 | no |
External links
@ref: 63071
culture collection no.: CCUG 64062
straininfo link
- @ref: 109877
- straininfo: 410857
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 63071 | Curators of the CCUG | https://www.ccug.se/strain?id=64062 | Culture Collection University of Gothenburg (CCUG) (CCUG 64062) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 109877 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID410857.1 |