Strain identifier
BacDive ID: 15667
Type strain: 
Species: Streptomyces sp.
Strain history: KCC S-0456 <-- IFO 13020 <-- SAJ <-- ISP 5416 <-- INMI 1510.
NCBI tax ID(s): 1931 (species)
version 9 (current version)
General
@ref: 9526
BacDive-ID: 15667
DSM-Number: 40416
keywords: 16S sequence, Bacteria
description: Streptomyces sp. DSM 40416 is a bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1931
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9526 | <- E.B. Shirling, ISP (Streptomyces aureomonopodiales) <- N.A. Krassilnikov, INMI |
| 67770 | KCC S-0456 <-- IFO 13020 <-- SAJ <-- ISP 5416 <-- INMI 1510. |
doi: 10.13145/bacdive15667.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces sp.
- full scientific name: Streptomyces Waksman and Henrici 1943 (Approved Lists 1980)
synonyms
@ref synonym 20215 Microechinospora 20215 Carbonactinospora 20215 Actinosporangium 20215 Actinopycnidium 20215 Elytrosporangium 20215 Streptoverticillium 20215 Chainia 20215 Indiella 20215 Actinacidiphila 20215 Kitasatoa 20215 Microellobosporia
@ref: 9526
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces sp.
full scientific name: Streptomyces sp.
type strain: no
Culture and growth conditions
culture medium
- @ref: 9526
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 9526 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country |
|---|---|---|---|
| 9526 | soil | ||
| 67770 | Soil | Russia | RUS |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_5503.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_287;98_1597;99_5503&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: AB184261
- Sequence Identity:
- Total samples: 139
- soil counts: 108
- aquatic counts: 13
- animal counts: 11
- plant counts: 7
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces sp. gene for 16S rRNA, partial sequence, strain: NBRC 13020 | AB184261 | 1466 | nuccore | 1931 |
| 20218 | Streptomyces aureomonopodiales gene for 16S ribosomal RNA, partial sequence, strain: JCM 4456 | D44153 | 121 | nuccore | 67276 |
External links
@ref: 9526
culture collection no.: DSM 40416, ATCC 19825, ATCC 25432, CBS 665.69, IFO 13020, INMI 1510, ISP 5416, JCM 4456, NBRC 13020, RIA 1212, MTCC 2530, NRRL B-12343, VKM Ac-707
straininfo link
- @ref: 84753
- straininfo: 37111
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9526 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40416) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40416 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 84753 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID37111.1 | StrainInfo: A central database for resolving microbial strain identifiers |