Strain identifier
version 8.1 (current version)
General
@ref: 62996
BacDive-ID: 156616
keywords: genome sequence, Bacteria, microaerophile, mesophilic, Gram-positive
description: Staphylococcus aureus CCUG 63582 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from Bulk milk.
NCBI tax id
- NCBI tax id: 1280
- Matching level: species
doi: 10.13145/bacdive156616.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Staphylococcaceae
- genus: Staphylococcus
- species: Staphylococcus aureus
- full scientific name: Staphylococcus aureus Rosenbach 1884 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Staphylococcus aureus subsp. anaerobius
@ref: 62996
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Staphylococcaceae
genus: Staphylococcus
species: Staphylococcus aureus
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture temp
- @ref: 62996
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 62996
- oxygen tolerance: microaerophile
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.559 |
| 69481 | no | 95 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 62996 C16:0 2.3 16 62996 C18:0 2.7 18 62996 C14:0 ISO 0.5 13.618 62996 C15:0 ANTEISO 56.2 14.711 62996 C15:0 ISO 6.7 14.621 62996 C16:0 iso 0.9 15.626 62996 C17:0 anteiso 17.9 16.722 62996 C17:0 iso 2.9 16.629 62996 C18:1 ω9c 1.5 17.769 62996 C18:2 ω6,9c/C18:0 ANTE 4.6 17.724 62996 C19:0 ANTEISO 0.9 18.729 62996 C20:2 ω6,9c 0.8 19.735 62996 Unidentified 2 15.026 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
Isolation, sampling and environmental information
isolation
- @ref: 62996
- sample type: Bulk milk
- sampling date: 2007-05-01
- geographic location: Somerset
- country: United Kingdom
- origin.country: GBR
- continent: Europe
isolation source categories
- Cat1: #Engineered
- Cat2: #Food production
- Cat3: #Dairy product
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Staphylococcus aureus NCTC13552 | GCA_900635255 | complete | ncbi | 1280 |
| 66792 | Staphylococcus aureus strain NCTC13552 | 1280.19111 | complete | patric | 1280 |
| 66792 | Staphylococcus aureus NCTC13552 | 2861109719 | complete | img | 1280 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 95 | no |
| flagellated | no | 92.089 | no |
| gram-positive | yes | 89.393 | no |
| anaerobic | no | 99.505 | yes |
| aerobic | yes | 91.162 | no |
| halophile | yes | 93.863 | no |
| spore-forming | no | 93.787 | no |
| thermophile | no | 99.723 | no |
| glucose-util | yes | 89.488 | no |
| motile | no | 89.982 | no |
| glucose-ferment | yes | 84.157 | no |
External links
@ref: 62996
culture collection no.: CCUG 63582, NCTC 13552
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 62996 | Curators of the CCUG | https://www.ccug.se/strain?id=63582 | Culture Collection University of Gothenburg (CCUG) (CCUG 63582) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |