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Strain identifier

BacDive ID: 156584

Type strain: Yes

Species: Caballeronia choica

NCBI tax ID(s): 326476 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 62941

BacDive-ID: 156584

keywords: genome sequence, Bacteria, aerobe, mesophilic

description: Caballeronia choica CCUG 63063 is an aerobe, mesophilic bacterium that was isolated from Rhizosphere soil.

NCBI tax id

  • NCBI tax id: 326476
  • Matching level: species

doi: 10.13145/bacdive156584.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Caballeronia
  • species: Caballeronia choica
  • full scientific name: Caballeronia choica (Vandamme et al. 2013) Dobritsa and Samadpour 2016
  • synonyms

    @refsynonym
    20215Paraburkholderia choica
    20215Burkholderia choica

@ref: 62941

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Caballeronia

species: Caballeronia choica

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 98.818

colony morphology

  • @ref: 62941
  • incubation period: >3 days

Culture and growth conditions

culture temp

  • @ref: 62941
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 62941
  • oxygen tolerance: aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 98.318

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 98.828

Isolation, sampling and environmental information

isolation

  • @ref: 62941
  • sample type: Rhizosphere soil
  • sampling date: 2003
  • country: Netherlands
  • origin.country: NLD
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host Body-Site#Plant#Rhizosphere
#Host#Plants

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Caballeronia choica LMG 22940GCA_001544535contigncbi326476
66792Burkholderia choica strain LMG 22940326476.3wgspatric326476
66792Caballeronia choica LMG 229402724679467draftimg326476
66792uncultured Prevotellamassilia sp. REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_E_17_1727.351GCA_934277135contigpatric1926676

External links

@ref: 62941

culture collection no.: CCUG 63063, LMG 22940

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23959831Burkholderia humi sp. nov., Burkholderia choica sp. nov., Burkholderia telluris sp. nov., Burkholderia terrestris sp. nov. and Burkholderia udeis sp. nov.: Burkholderia glathei-like bacteria from soil and rhizosphere soil.Vandamme P, De Brandt E, Houf K, Salles JF, Dirk van Elsas J, Spilker T, LiPuma JJInt J Syst Evol Microbiol10.1099/ijs.0.048900-02013Bacterial Typing Techniques, Base Composition, Burkholderia/*classification/genetics/isolation & purification, China, DNA Gyrase/genetics, DNA, Bacterial/genetics, Fatty Acids/chemistry, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Waste Water/microbiologyPathogenicity
Phylogeny24981326Burkholderia jiangsuensis sp. nov., a methyl parathion degrading bacterium, isolated from methyl parathion contaminated soil.Liu XY, Li CX, Luo XJ, Lai QL, Xu JHInt J Syst Evol Microbiol10.1099/ijs.0.064444-02014Bacterial Typing Techniques, Base Composition, Burkholderia/*classification/genetics/isolation & purification, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Insecticides/metabolism, Methyl Parathion/*metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Soil Pollutants/metabolism, Ubiquinone/chemistryMetabolism
Phylogeny30288561Caballeronia ginsengisoli sp. nov., isolated from ginseng cultivating soil.Quan XT, Liu QZ, Siddiqi MZ, Im WTArch Microbiol10.1007/s00203-018-1577-02018Base Composition, Burkholderiaceae/chemistry/*classification/genetics/isolation & purification, DNA, Bacterial/chemistry, Fatty Acids/analysis, Panax, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Soil, *Soil MicrobiologyEnzymology

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
62941Curators of the CCUGhttps://www.ccug.se/strain?id=63063Culture Collection University of Gothenburg (CCUG) (CCUG 63063)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes