Strain identifier
version 8.1 (current version)
General
@ref: 62939
BacDive-ID: 156583
keywords: genome sequence, Bacteria, aerobe, mesophilic, motile
description: Caballeronia udeis CCUG 63061 is an aerobe, mesophilic, motile bacterium that was isolated from Naphtholene contaminated soil.
NCBI tax id
- NCBI tax id: 1232866
- Matching level: species
doi: 10.13145/bacdive156583.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Burkholderiaceae
- genus: Caballeronia
- species: Caballeronia udeis
- full scientific name: Caballeronia udeis (Vandamme et al. 2013) Dobritsa and Samadpour 2016
synonyms
@ref synonym 20215 Paraburkholderia udeis 20215 Burkholderia udeis
@ref: 62939
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Burkholderiaceae
genus: Caballeronia
species: Caballeronia udeis
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 90.055 | |
| 69480 | 99.988 | negative |
Culture and growth conditions
culture temp
- @ref: 62939
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 62939
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.998 |
| 69481 | no | 94 |
Isolation, sampling and environmental information
isolation
- @ref: 62939
- sample type: Naphtholene contaminated soil
- sampling date: 2000
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Contamination | |
| #Environmental | #Terrestrial | #Soil |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Caballeronia udeis LMG 27134 | GCA_001544555 | contig | ncbi | 1232866 |
| 66792 | Burkholderia udeis strain LMG 27134 | 1232866.3 | wgs | patric | 1232866 |
| 66792 | Caballeronia udeis LMG 27134 | 2713896996 | draft | img | 1232866 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 94 | no |
| motile | yes | 86.543 | no |
| gram-positive | no | 98.045 | no |
| anaerobic | no | 98.222 | yes |
| aerobic | yes | 82.457 | no |
| halophile | no | 95.358 | no |
| spore-forming | no | 90.736 | no |
| glucose-util | yes | 91.016 | no |
| flagellated | no | 83.246 | no |
| thermophile | no | 99.766 | yes |
| glucose-ferment | no | 90.499 | no |
External links
@ref: 62939
culture collection no.: CCUG 63061, LMG 27134
straininfo link
- @ref: 109796
- straininfo: 129484
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23959831 | Burkholderia humi sp. nov., Burkholderia choica sp. nov., Burkholderia telluris sp. nov., Burkholderia terrestris sp. nov. and Burkholderia udeis sp. nov.: Burkholderia glathei-like bacteria from soil and rhizosphere soil. | Vandamme P, De Brandt E, Houf K, Salles JF, Dirk van Elsas J, Spilker T, LiPuma JJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.048900-0 | 2013 | Bacterial Typing Techniques, Base Composition, Burkholderia/*classification/genetics/isolation & purification, China, DNA Gyrase/genetics, DNA, Bacterial/genetics, Fatty Acids/chemistry, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Waste Water/microbiology | Pathogenicity |
| Phylogeny | 30288561 | Caballeronia ginsengisoli sp. nov., isolated from ginseng cultivating soil. | Quan XT, Liu QZ, Siddiqi MZ, Im WT | Arch Microbiol | 10.1007/s00203-018-1577-0 | 2018 | Base Composition, Burkholderiaceae/chemistry/*classification/genetics/isolation & purification, DNA, Bacterial/chemistry, Fatty Acids/analysis, Panax, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Soil, *Soil Microbiology | Enzymology |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 62939 | Curators of the CCUG | https://www.ccug.se/strain?id=63061 | Culture Collection University of Gothenburg (CCUG) (CCUG 63061) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 109796 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID129484.1 |