Strain identifier
BacDive ID: 156556
Type strain: 
Species: Haemophilus parainfluenzae
Variant: biovar II
NCBI tax ID(s): 729 (species)
version 9.3 (current version)
General
@ref: 62876
BacDive-ID: 156556
keywords: genome sequence, Bacteria, microaerophile, mesophilic, Gram-negative
description: Haemophilus parainfluenzae CCUG 62655 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from Human.
NCBI tax id
- NCBI tax id: 729
- Matching level: species
doi: 10.13145/bacdive156556.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pasteurellales
- family: Pasteurellaceae
- genus: Haemophilus
- species: Haemophilus parainfluenzae
- full scientific name: Haemophilus parainfluenzae Rivers 1922 (Approved Lists 1980)
@ref: 62876
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pasteurellales
family: Pasteurellaceae
genus: Haemophilus
species: Haemophilus parainfluenzae
variant: biovar II
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 125439 | negative | 97.8 | |
| 125438 | 92.768 | no | |
| 125438 | negative | 96.978 |
Culture and growth conditions
culture temp
- @ref: 62876
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 62876 | microaerophile | |
| 125439 | obligate aerobe | 90.3 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125439 | no | 99.1 |
| 125438 | no | 93.697 |
Isolation, sampling and environmental information
isolation
- @ref: 62876
- sample type: Human
- sampling date: 2010
- geographic location: Århus
- country: Denmark
- origin.country: DNK
- continent: Europe
isolation source categories
- Cat1: #Host
- Cat2: #Human
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Haemophilus parainfluenzae CCUG 62655 | GCA_001679455 | scaffold | ncbi | 729 |
| 66792 | Haemophilus parainfluenzae strain CCUG 62655 | 729.36 | wgs | patric | 729 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 96.978 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 87.399 | yes |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 88.456 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 93.697 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 96.5 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 92.768 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 99.1 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 67 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 97.8 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 90.3 |
External links
@ref: 62876
culture collection no.: CCUG 62655
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 62876 | Curators of the CCUG | https://www.ccug.se/strain?id=62655 | Culture Collection University of Gothenburg (CCUG) (CCUG 62655) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |