Strain identifier

BacDive ID: 156528

Type strain: Yes

Species: Achromobacter aegrifaciens

Strain Designation: LiPuma AU4014, Vandamme R-31134

Strain history: CIP <- 2014, LMG <- 2012, P. Vandamme, Gent Univ., Gent, Belgium: strain Vandamme R-31134 <- 2002, J. Lipuma, Michigan Univ., Michigan, USA strain: LiPuma AU4014

NCBI tax ID(s): 1287736 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 62842

BacDive-ID: 156528

keywords: genome sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Achromobacter aegrifaciens LiPuma AU4014 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from human sputum.

NCBI tax id

  • NCBI tax id: 1287736
  • Matching level: species

strain history

  • @ref: 116051
  • history: CIP <- 2014, LMG <- 2012, P. Vandamme, Gent Univ., Gent, Belgium: strain Vandamme R-31134 <- 2002, J. Lipuma, Michigan Univ., Michigan, USA strain: LiPuma AU4014

doi: 10.13145/bacdive156528.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Achromobacter
  • species: Achromobacter aegrifaciens
  • full scientific name: Achromobacter aegrifaciens Vandamme et al. 2014

@ref: 62842

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Achromobacter

species: Achromobacter aegrifaciens

strain designation: LiPuma AU4014, Vandamme R-31134

type strain: yes

Morphology

cell morphology

  • @ref: 116051
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 62842
  • incubation period: 1 day

Culture and growth conditions

culture medium

  • @ref: 116051
  • name: CIP Medium 72
  • growth: yes
  • link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

  • @ref: 62842
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 62842
  • oxygen tolerance: aerobe

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    62842C12:00.912
    62842C14:06.914
    62842C15:00.615
    62842C16:037.616
    62842C18:00.518
    62842C12:0 2OH2.913.178
    62842C14:0 3OH/C16:1 ISO I7.415.485
    62842C15:1 ω6c0.414.856
    62842C16:0 2OH0.517.233
    62842C16:1 ω7c18.415.819
    62842C17:0 CYCLO22.716.888
    62842C18:1 ω7c /12t/9t1.517.824
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentisolation date
62842human sputumUSAUSANorth America
116051Human, SputumUnited States of AmericaUSANorth America2002

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Sputum

Safety information

risk assessment

  • @ref: 116051
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Achromobacter aegrifaciens LMG 26852GCA_902859735contigncbi1287736
66792Achromobacter aegrifaciens strain LMG 268521287736.3wgspatric1287736
66792Achromobacter aegrifaciens LMG 268522900112703draftimg1287736

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes86.591no
gram-positiveno98.342no
anaerobicno98.621yes
aerobicyes86.567yes
halophileno89.358no
spore-formingno94.026no
thermophileno99.575no
glucose-utilno61.064no
flagellatedno60.413no
glucose-fermentno90.005no

External links

@ref: 62842

culture collection no.: CCUG 62438, LMG 26852, CIP 110713

straininfo link

  • @ref: 109749
  • straininfo: 379293

literature

  • topic: Phylogeny
  • Pubmed-ID: 23891345
  • title: Classification of Achromobacter genogroups 2, 5, 7 and 14 as Achromobacter insuavis sp. nov., Achromobacter aegrifaciens sp. nov., Achromobacter anxifer sp. nov. and Achromobacter dolens sp. nov., respectively.
  • authors: Vandamme P, Moore ER, Cnockaert M, Peeters C, Svensson-Stadler L, Houf K, Spilker T, LiPuma JJ
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2013.06.005
  • year: 2013
  • mesh: Achromobacter/chemistry/*classification/genetics/physiology, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, Fatty Acids/analysis, Genotype, Molecular Sequence Data, Multilocus Sequence Typing, Phylogeny
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
62842Curators of the CCUGhttps://www.ccug.se/strain?id=62438Culture Collection University of Gothenburg (CCUG) (CCUG 62438)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
109749Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID379293.1
116051Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110713Collection of Institut Pasteur (CIP 110713)