Strain identifier
BacDive ID: 156528
Type strain:
Species: Achromobacter aegrifaciens
Strain Designation: LiPuma AU4014, Vandamme R-31134
Strain history: CIP <- 2014, LMG <- 2012, P. Vandamme, Gent Univ., Gent, Belgium: strain Vandamme R-31134 <- 2002, J. Lipuma, Michigan Univ., Michigan, USA strain: LiPuma AU4014
NCBI tax ID(s): 1287736 (species)
General
@ref: 62842
BacDive-ID: 156528
keywords: genome sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped
description: Achromobacter aegrifaciens LiPuma AU4014 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from human sputum.
NCBI tax id
- NCBI tax id: 1287736
- Matching level: species
strain history
- @ref: 116051
- history: CIP <- 2014, LMG <- 2012, P. Vandamme, Gent Univ., Gent, Belgium: strain Vandamme R-31134 <- 2002, J. Lipuma, Michigan Univ., Michigan, USA strain: LiPuma AU4014
doi: 10.13145/bacdive156528.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Alcaligenaceae
- genus: Achromobacter
- species: Achromobacter aegrifaciens
- full scientific name: Achromobacter aegrifaciens Vandamme et al. 2014
@ref: 62842
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Alcaligenaceae
genus: Achromobacter
species: Achromobacter aegrifaciens
strain designation: LiPuma AU4014, Vandamme R-31134
type strain: yes
Morphology
cell morphology
- @ref: 116051
- gram stain: negative
- cell shape: rod-shaped
- motility: no
colony morphology
- @ref: 62842
- incubation period: 1 day
Culture and growth conditions
culture medium
- @ref: 116051
- name: CIP Medium 72
- growth: yes
- link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
culture temp
- @ref: 62842
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 62842
- oxygen tolerance: aerobe
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 62842 C12:0 0.9 12 62842 C14:0 6.9 14 62842 C15:0 0.6 15 62842 C16:0 37.6 16 62842 C18:0 0.5 18 62842 C12:0 2OH 2.9 13.178 62842 C14:0 3OH/C16:1 ISO I 7.4 15.485 62842 C15:1 ω6c 0.4 14.856 62842 C16:0 2OH 0.5 17.233 62842 C16:1 ω7c 18.4 15.819 62842 C17:0 CYCLO 22.7 16.888 62842 C18:1 ω7c /12t/9t 1.5 17.824 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | isolation date |
---|---|---|---|---|---|
62842 | human sputum | USA | USA | North America | |
116051 | Human, Sputum | United States of America | USA | North America | 2002 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body Product | #Fluids | #Sputum |
Safety information
risk assessment
- @ref: 116051
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Achromobacter aegrifaciens LMG 26852 | GCA_902859735 | contig | ncbi | 1287736 |
66792 | Achromobacter aegrifaciens strain LMG 26852 | 1287736.3 | wgs | patric | 1287736 |
66792 | Achromobacter aegrifaciens LMG 26852 | 2900112703 | draft | img | 1287736 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 86.591 | no |
gram-positive | no | 98.342 | no |
anaerobic | no | 98.621 | yes |
aerobic | yes | 86.567 | yes |
halophile | no | 89.358 | no |
spore-forming | no | 94.026 | no |
thermophile | no | 99.575 | no |
glucose-util | no | 61.064 | no |
flagellated | no | 60.413 | no |
glucose-ferment | no | 90.005 | no |
External links
@ref: 62842
culture collection no.: CCUG 62438, LMG 26852, CIP 110713
straininfo link
- @ref: 109749
- straininfo: 379293
literature
- topic: Phylogeny
- Pubmed-ID: 23891345
- title: Classification of Achromobacter genogroups 2, 5, 7 and 14 as Achromobacter insuavis sp. nov., Achromobacter aegrifaciens sp. nov., Achromobacter anxifer sp. nov. and Achromobacter dolens sp. nov., respectively.
- authors: Vandamme P, Moore ER, Cnockaert M, Peeters C, Svensson-Stadler L, Houf K, Spilker T, LiPuma JJ
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2013.06.005
- year: 2013
- mesh: Achromobacter/chemistry/*classification/genetics/physiology, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, Fatty Acids/analysis, Genotype, Molecular Sequence Data, Multilocus Sequence Typing, Phylogeny
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
62842 | Curators of the CCUG | https://www.ccug.se/strain?id=62438 | Culture Collection University of Gothenburg (CCUG) (CCUG 62438) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
109749 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID379293.1 | |
116051 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110713 | Collection of Institut Pasteur (CIP 110713) |