Strain identifier

BacDive ID: 156474

Type strain: No

Species: Achromobacter mucicolens

NCBI tax ID(s): 1389922 (species)

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General

@ref: 62757

BacDive-ID: 156474

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative

description: Achromobacter mucicolens CCUG 61962 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Human sputum,cystic fibrosis.

NCBI tax id

  • NCBI tax id: 1389922
  • Matching level: species

doi: 10.13145/bacdive156474.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Achromobacter
  • species: Achromobacter mucicolens
  • full scientific name: Achromobacter mucicolens Vandamme et al. 2013

@ref: 62757

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Achromobacter

species: Achromobacter mucicolens

type strain: no

Morphology

cell morphology

  • @ref: 125438
  • gram stain: negative
  • confidence: 96.418

colony morphology

  • @ref: 62757
  • incubation period: 1 day

Culture and growth conditions

culture temp

  • @ref: 62757
  • growth: positive
  • type: growth
  • temperature: 30

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
62757aerobe
125438aerobe90.983
125439obligate aerobe97.3

spore formation

  • @ref: 125439
  • spore formation: no
  • confidence: 93.8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836917306maltose-assimilation
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
62757--+--+--------------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
62757+-------------+++++++

Isolation, sampling and environmental information

isolation

  • @ref: 62757
  • sample type: Human sputum,cystic fibrosis
  • sampling date: 2009
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Infection#Disease#Cystic fibrosis
#Host#Human
#Infection#Patient
#Host Body Product#Fluids#Sputum

Sequence information

16S sequences

  • @ref: 124043
  • description: Achromobacter mucicolens partial 16S rRNA gene, strain CCUG 61962
  • accession: HG423438
  • length: 1361
  • database: nuccore
  • NCBI tax ID: 1389922

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Achromobacter mucicolens LMG 26686GCA_902860105contigncbi1389922
66792Achromobacter mucicolens strain LMG 266861389922.6wgspatric1389922

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno96.418no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no97.906yes
125438spore-formingspore-formingAbility to form endo- or exosporesno87.378no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes90.983yes
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno98.393yes
125438motile2+flagellatedAbility to perform flagellated movementyes85.605no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno93.8
125439BacteriaNetmotilityAbility to perform movementyes72.2
125439BacteriaNetgram_stainReaction to gram-stainingnegative86.6
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe97.3

External links

@ref: 62757

culture collection no.: CCUG 61962, LMG 26686

straininfo link

  • @ref: 109707
  • straininfo: 388186

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
62757Curators of the CCUGhttps://www.ccug.se/strain?id=61962Culture Collection University of Gothenburg (CCUG) (CCUG 61962)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
109707Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID388186.1
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG