Strain identifier
version 8.1 (current version)
General
@ref: 62640
BacDive-ID: 156388
keywords: genome sequence, Bacteria, microaerophile, mesophilic, Gram-positive
description: Blastococcus sp. CCUG 61487 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from Human peritoneal dialysis fluid,71-yr-old man.
NCBI tax id
- NCBI tax id: 1840703
- Matching level: species
doi: 10.13145/bacdive156388.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Geodermatophilales
- family: Geodermatophilaceae
- genus: Blastococcus
- species: Blastococcus sp.
- full scientific name: Blastococcus Ahrens and Moll 1970 (Approved Lists 1980)
@ref: 62640
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Geodermatophilales
family: Geodermatophilaceae
genus: Blastococcus
species: Blastococcus sp.
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
colony morphology
- @ref: 62640
- incubation period: 2 days
Culture and growth conditions
culture temp
- @ref: 62640
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 62640
- oxygen tolerance: microaerophile
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.695
Isolation, sampling and environmental information
isolation
- @ref: 62640
- sample type: Human peritoneal dialysis fluid,71-yr-old man
- sampling date: 2011-07-04
- geographic location: Göteborg
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | #Male |
| #Host Body-Site | #Other | #Abdomen |
| #Infection | #Medical environment | #Medical practice |
| #Infection | #Patient |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Blastococcus sp. CCUG 61487 | GCA_005222955 | scaffold | ncbi | 1840703 |
| 66792 | Blastococcus sp. CCUG 61487 | 1840703.3 | wgs | patric | 1840703 |
| 66792 | Blastococcus sp. CCUG 61487 | 2894877226 | draft | img | 1840703 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 66 | no |
| flagellated | no | 94.762 | no |
| gram-positive | yes | 92.117 | no |
| anaerobic | no | 98.913 | yes |
| aerobic | yes | 86.344 | no |
| halophile | no | 92.342 | no |
| spore-forming | no | 79.984 | no |
| glucose-util | yes | 84.127 | no |
| thermophile | no | 99.154 | yes |
| motile | yes | 52.637 | no |
| glucose-ferment | no | 91.339 | no |
External links
@ref: 62640
culture collection no.: CCUG 61487
straininfo link
- @ref: 109636
- straininfo: 409279
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 62640 | Curators of the CCUG | https://www.ccug.se/strain?id=61487 | Culture Collection University of Gothenburg (CCUG) (CCUG 61487) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 109636 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID409279.1 |